RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MAP4K3Q8IVH8 894 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 RPGRIP1Q96KN7 1286 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 UROC1Q96N76 676 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 ST6GALNAC4Q9H4F1 302 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP28-204ENST00000537642 FNIP2Q9P278 1114 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 C2orf16Q68DN1 1984 aa16.16■□□□□ 0.18
USP28-204ENST00000537642 FAM189A1O60320 539 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 B3GAT3O94766 335 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 CLTAP09496 248 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 CXCL8P10145 99 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 RPL17P18621 184 aaKnown RBP16.15■□□□□ 0.18
USP28-204ENST00000537642 TNFSF9P41273 254 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 ELAVL2Q12926 359 aaKnown RBP16.15■□□□□ 0.18
USP28-204ENST00000537642 E2F4Q16254 413 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 ZBTB41Q5SVQ8 909 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
USP28-204ENST00000537642 PRSS55Q6UWB4 352 aaPredicted RBP16.15■□□□□ 0.18
USP28-204ENST00000537642 TMC5Q6UXY8 1006 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 ZNF720Q7Z2F6 126 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 CEP57Q86XR8 500 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 RNF135Q8IUD6 432 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 C3orf58Q8NDZ4 430 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 C18orf25Q96B23 403 aaPredicted RBP16.15■□□□□ 0.18
USP28-204ENST00000537642 TTPALQ9BTX7 342 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 POMKQ9H5K3 350 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 SFXN1Q9H9B4 322 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 MAN1C1Q9NR34 630 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 SLC38A7Q9NVC3 462 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 SEL1LQ9UBV2 794 aa16.15■□□□□ 0.18
USP28-204ENST00000537642 A0A0B4J269 797 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 ANKRD63C9JTQ0 380 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 PPP1R37O75864 691 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 GLUD1P00367 558 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 GAP43P17677 238 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 ABCD1P33897 745 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 MTHFRP42898 656 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 DNM1Q05193 864 aaKnown RBP16.14■□□□□ 0.17
USP28-204ENST00000537642 ATL3Q6DD88 541 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 PALB2Q86YC2 1186 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 GLYCTKQ8IVS8 523 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 LNX1Q8TBB1 728 aaPredicted RBP16.14■□□□□ 0.17
USP28-204ENST00000537642 KCNG4Q8TDN1 519 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 PIK3R5Q8WYR1 880 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 DDX27Q96GQ7 796 aaKnown RBP16.14■□□□□ 0.17
USP28-204ENST00000537642 RIPOR3Q96MK2 946 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 NECTIN4Q96NY8 510 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 STRA6Q9BX79 667 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 C1QTNF1Q9BXJ1 281 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 PLEKHA5Q9HAU0 1116 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 DENND4AQ7Z401 1863 aa16.14■□□□□ 0.17
USP28-204ENST00000537642 TTC26A0AVF1 554 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 FRMD3A2A2Y4 597 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 TISP43B9A030 160 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 I3L4J1 428 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 PODXLO00592 558 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 OGTO15294 1046 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 TGM5O43548 720 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 DCXO43602 365 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 SPATA31D3P0C874 917 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 MYBP10242 640 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 FGFR3P22607 806 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 BRCC3P46736 316 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 CREMQ03060 361 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 ENOX2Q16206 610 aaKnown RBP16.13■□□□□ 0.17
USP28-204ENST00000537642 PSMD5Q16401 504 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 KYAT1Q16773 422 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 LILRA6Q6PI73 481 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.13■□□□□ 0.17
USP28-204ENST00000537642 SPATA31D4Q6ZUB0 917 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 GPR149Q86SP6 731 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 TMEM130Q8N3G9 435 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 STAMQ92783 540 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 CLSTN3Q9BQT9 956 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 MSTO1Q9BUK6 570 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 IKZF4Q9H2S9 585 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 MRPL44Q9H9J2 332 aaKnown RBP16.13■□□□□ 0.17
USP28-204ENST00000537642 C11orf16Q9NQ32 467 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 TBC1D7Q9P0N9 293 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 MUTYHQ9UIF7 546 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 PCDHA7Q9UN72 937 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 ZDHHC9Q9Y397 364 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 ANK1P16157 1881 aa16.13■□□□□ 0.17
USP28-204ENST00000537642 SPDYE4A6NLX3 237 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 LACTBL1A8MY62 500 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 C1RP00736 705 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 ALADP13716 330 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 IDEP14735 1019 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 SP100P23497 879 aaPredicted RBP16.12■□□□□ 0.17
USP28-204ENST00000537642 RPL9P32969 192 aaKnown RBP16.12■□□□□ 0.17
USP28-204ENST00000537642 SPAG1Q07617 926 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 KCNA1Q09470 495 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 HERC4Q5GLZ8 1057 aaPredicted RBP16.12■□□□□ 0.17
USP28-204ENST00000537642 ATAT1Q5SQI0 421 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 CMASQ8NFW8 434 aaPredicted RBP16.12■□□□□ 0.17
USP28-204ENST00000537642 DHX58Q96C10 678 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 HVCN1Q96D96 273 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 CUEDC2Q9H467 287 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 PANK4Q9NVE7 773 aa16.12■□□□□ 0.17
USP28-204ENST00000537642 KBTBD4Q9NVX7 518 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms