RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 CTNND2Q9UQB3 1225 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PIN4Q9Y237 131 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GDAQ9Y2T3 454 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PPP2R2CQ9Y2T4 447 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CLUHO75153 1309 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CNTNAP2Q9UHC6 1331 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SOWAHDA6NJG2 315 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MEIS3P2A8K0S8 358 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 RNF225M0QZC1 329 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MSH4O15457 936 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 B4GALT3O60512 393 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GAS7O60861 476 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CSDE1O75534 798 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SLU7O95391 586 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SSBP05455 408 aaKnown RBP eCLIP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GNA11P29992 359 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GBP2P32456 591 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PBX1P40424 430 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 INF2Q27J81 1249 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MTERF2Q49AM1 385 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 XKR3Q5GH77 459 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SPATA1Q5VX52 437 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 CATSPER4Q7RTX7 472 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MRPL10Q7Z7H8 261 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 ZNF280BQ86YH2 543 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SLC44A3Q8N4M1 653 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 HDAC7Q8WUI4 952 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 FAM193BQ96PV7 902 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 GSDMAQ96QA5 445 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 PLIN2Q99541 437 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 BAG1Q99933 345 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 IRX2Q9BZI1 471 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 UNC45AQ9H3U1 944 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MRPL44Q9H9J2 332 aaKnown RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 MAN1C1Q9NR34 630 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 KANSL3Q9P2N6 904 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SUCLA2Q9P2R7 463 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 SEPT9Q9UHD8 586 aaPredicted RBP9.02□□□□□ -0.97
NEDD8-207ENST00000533242 FAN1Q9Y2M0 1017 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 R4GN57 208 aa9.02□□□□□ -0.97
NEDD8-207ENST00000533242 INPPL1O15357 1258 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 N4BP1O75113 896 aaKnown RBP9.01□□□□□ -0.97
NEDD8-207ENST00000533242 DDHD2O94830 711 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 STBD1O95210 358 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 C1RP00736 705 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 SOD2P04179 222 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 ALDH2P05091 517 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 URODP06132 367 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 ADH1AP07327 375 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 CCT6AP40227 531 aaKnown RBP9.01□□□□□ -0.97
NEDD8-207ENST00000533242 GLIPR1L2Q4G1C9 344 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 AGMOQ6ZNB7 445 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 KIAA2013Q8IYS2 634 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 CPLX3Q8WVH0 158 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 RSAD2Q8WXG1 361 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 CA14Q9ULX7 337 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 PCDHA4Q9UN74 947 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 PCDHB2Q9Y5E7 798 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 ARID2Q68CP9 1835 aa9.01□□□□□ -0.97
NEDD8-207ENST00000533242 RIF1Q5UIP0 2472 aaKnown RBP9.01□□□□□ -0.97
NEDD8-207ENST00000533242 CCDC195A0A1B0GUA6 201 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 ARHGAP6O43182 974 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 BMP15O95972 392 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 SP9P0CG40 484 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 USP11P51784 963 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 PMS1P54277 932 aaKnown RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 LRCH2Q5VUJ6 765 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RAD9BQ6WBX8 426 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 MIER3Q7Z3K6 550 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RIN2Q8WYP3 895 aaPredicted RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 BORCS6Q96GS4 357 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RPS6KC1Q96S38 1066 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 MYADMQ96S97 322 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 JPH2Q9BR39 696 aaPredicted RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 ZMYND15Q9H091 742 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RSAD1Q9HA92 442 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RXFP1Q9HBX9 757 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 SLC2A4RGQ9NR83 387 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 AGPAT5Q9NUQ2 364 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 ZNF446Q9NWS9 450 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 DLGAP2Q9P1A6 1054 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 DACH1Q9UI36 760 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 TRIM49BA6NDI0 452 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 NRP1O14786 923 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 CHMP2AO43633 222 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 EDIL3O43854 480 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 MAFO75444 373 aaPredicted RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 GLUD1P00367 558 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 ABL1P00519 1130 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 GYPCP04921 128 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 TRAPPC10P48553 1259 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RHPN2Q8IUC4 686 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 RNF168Q8IYW5 571 aaPredicted RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 IQUBQ8NA54 791 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 SMG7Q92540 1137 aaKnown RBP9□□□□□ -0.97
NEDD8-207ENST00000533242 RUBCNQ92622 972 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 EPC1Q9H2F5 836 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 SIT1Q9Y3P8 196 aa9□□□□□ -0.97
NEDD8-207ENST00000533242 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9□□□□□ -0.97
NEDD8-207ENST00000533242 USP34Q70CQ2 3546 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms