RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CSF2RAP15509 400 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 TNNI1P19237 187 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 AXLP30530 894 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 MRPS6P82932 125 aaKnown RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 MGAT3Q09327 533 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 GPNMBQ14956 572 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 SV2AQ7L0J3 742 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CHP1Q99653 195 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 NHEJ1Q9H9Q4 299 aaPredicted RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 PPP2R2CQ9Y2T4 447 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 FHOD1Q9Y613 1164 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 A0A1B0GUA9 196 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 TSPAN1O60635 241 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 NDUFA10O95299 355 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 IPO7O95373 1038 aaKnown RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 SERPING1P05155 500 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CCDC172P0C7W6 258 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 ARF4P18085 180 aaPredicted RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 RFC2P35250 354 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CRYBB1P53674 252 aaPredicted RBP22.9■■□□□ 1.26
VPS28-212ENST00000530836 FPGSQ05932 587 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 TMEM62Q0P6H9 643 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 C15orf39Q6ZRI6 1047 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 WDR49Q8IV35 697 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CCDC42Q96M95 316 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 PPP1R16BQ96T49 567 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 GDF15Q99988 308 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CDT1Q9H211 546 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 CDY2AQ9Y6F7 541 aa22.9■■□□□ 1.26
VPS28-212ENST00000530836 M0QZ92 97 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 KIF2AO00139 706 aaPredicted RBP22.89■■□□□ 1.25
VPS28-212ENST00000530836 IL18RAPO95256 599 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 EIF4BP23588 611 aaKnown RBP22.89■■□□□ 1.25
VPS28-212ENST00000530836 JAM2P57087 298 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 KRT83P78385 493 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 PPIGQ13427 754 aaKnown RBP eCLIP22.89■■□□□ 1.256e-8■□□□□ 10.8
VPS28-212ENST00000530836 RAPGEF1Q13905 1077 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 MBTPS1Q14703 1052 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 TOGARAM2Q6ZUX3 1019 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 PPP1R13BQ96KQ4 1090 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 POP1Q99575 1024 aaKnown RBP22.89■■□□□ 1.25
VPS28-212ENST00000530836 CELF4Q9BZC1 486 aaKnown RBP22.89■■□□□ 1.25
VPS28-212ENST00000530836 PDZD7Q9H5P4 517 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 PDE11AQ9HCR9 933 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 RAB20Q9NX57 234 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 TRMT1Q9NXH9 659 aaKnown RBP22.89■■□□□ 1.25
VPS28-212ENST00000530836 DNAJC12Q9UKB3 198 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 ADGRG1Q9Y653 693 aa22.89■■□□□ 1.25
VPS28-212ENST00000530836 NBNO60934 754 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 CLTAP09496 248 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 STAT1P42224 750 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 APBA1Q02410 837 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 MAPK8IP2Q13387 824 aaPredicted RBP22.88■■□□□ 1.25
VPS28-212ENST00000530836 MTF1Q14872 753 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 ASIC2Q16515 512 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 DCAF4L1Q3SXM0 396 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 ZACNQ401N2 412 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 EEF1DP3Q658K8 133 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 IQCEQ6IPM2 695 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 RPUSD2Q8IZ73 545 aaKnown RBP22.88■■□□□ 1.25
VPS28-212ENST00000530836 VWCEQ96DN2 955 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 TRPV2Q9Y5S1 764 aa22.88■■□□□ 1.25
VPS28-212ENST00000530836 EIF3CLB5ME19 914 aaKnown RBP22.87■■□□□ 1.25
VPS28-212ENST00000530836 ANXA13P27216 316 aa22.87■■□□□ 1.25
VPS28-212ENST00000530836 ZBTB41Q5SVQ8 909 aa22.87■■□□□ 1.25
VPS28-212ENST00000530836 CATSPER4Q7RTX7 472 aa22.87■■□□□ 1.25
VPS28-212ENST00000530836 EIF3CQ99613 913 aaKnown RBP22.87■■□□□ 1.25
VPS28-212ENST00000530836 RPF1Q9H9Y2 349 aaKnown RBP22.87■■□□□ 1.25
VPS28-212ENST00000530836 IL23AQ9NPF7 189 aa22.87■■□□□ 1.25
VPS28-212ENST00000530836 CXCL10P02778 98 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 C4BPAP04003 597 aaKnown RBP22.86■■□□□ 1.25
VPS28-212ENST00000530836 FERP16591 822 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 PTPN14Q15678 1187 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 PHLDB3Q6NSJ2 640 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 NOTUMQ6P988 496 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 C16orf59Q7L2K0 433 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 THNSL1Q8IYQ7 743 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 OSMRQ99650 979 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 DEF6Q9H4E7 631 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 CDHR5Q9HBB8 845 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 ARHGAP20Q9P2F6 1191 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 GINS2Q9Y248 185 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 USP27XA6NNY8 438 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 CSDE1O75534 798 aaKnown RBP22.86■■□□□ 1.25
VPS28-212ENST00000530836 TNFSF9P41273 254 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 PRKCIP41743 596 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 EPHB4P54760 987 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 WDR44Q5JSH3 913 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 HGSNATQ68CP4 663 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 ENOSF1Q7L5Y1 443 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 DEFB128Q7Z7B8 93 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 TAS1R2Q8TE23 839 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 ZNF516Q92618 1163 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 NT5C1BQ96P26 610 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 TOPORSQ9NS56 1045 aaPredicted RBP22.86■■□□□ 1.25
VPS28-212ENST00000530836 SQORQ9Y6N5 450 aa22.86■■□□□ 1.25
VPS28-212ENST00000530836 F8VZ95 297 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 TULP1O00294 542 aaPredicted RBP22.85■■□□□ 1.25
VPS28-212ENST00000530836 PFKMP08237 780 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 ACRP10323 421 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms