RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PLBD2Q8NHP8 589 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 PPP1R14CQ8TAE6 165 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 KLHDC4Q8TBB5 520 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 MDM1Q8TC05 714 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 CCHCR1Q8TD31 782 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 CEP95Q96GE4 821 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 BORCS6Q96GS4 357 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 TMEM176AQ96HP8 235 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 CDK5RAP3Q96JB5 506 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RIPOR3Q96MK2 946 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 WDR92Q96MX6 357 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 SAMD11Q96NU1 681 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RBM15Q96T37 977 aaKnown RBP eCLIP3.99□□□□□ -1.77
CD44-229ENST00000528672 PDCD2LQ9BRP1 358 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 TERF2IPQ9NYB0 399 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 NCDNQ9UBB6 729 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 STAP2Q9UGK3 403 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RUVBL1Q9Y265 456 aaKnown RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 STXBP5LQ9Y2K9 1186 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 CTDP1Q9Y5B0 961 aaPredicted RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 CFAP20Q9Y6A4 193 aaKnown RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 SLC4A7Q9Y6M7 1214 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 LAMTOR5O43504 91 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 CNOT4O95628 575 aaKnown RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 FTLP02792 175 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 SBK3P0C264 359 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 XPAP23025 273 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 CNR2P34972 360 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 PIK3CBP42338 1070 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 PRIM2P49643 509 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 GPR15P49685 360 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 HGFACQ04756 655 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 BIRC3Q13489 604 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 POLD3Q15054 466 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 SPATS1Q496A3 300 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 ALFQ53S48 1182 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 AGBL4Q5VU57 503 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 FAM180AQ6UWF9 173 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 BTNL9Q6UXG8 535 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 FAM43BQ6ZT52 329 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 PRRT2Q7Z6L0 340 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 RALYLQ86SE5 291 aaKnown RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 ADGRE4PQ86SQ3 457 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 TTC7BQ86TV6 843 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 RHOT1Q8IXI2 618 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 GPR135Q8IZ08 494 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 RTKN2Q8IZC4 609 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 OR2C3Q8N628 320 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 DCBLD1Q8N8Z6 715 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 ANKRD53Q8N9V6 530 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 WDR48Q8TAF3 677 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 SLC35B2Q8TB61 432 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 CCT6BQ92526 530 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 SECISBP2LQ93073 1101 aaKnown RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 RGMAQ96B86 450 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 HIST1H2AHQ96KK5 128 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 HIST1H2AJQ99878 128 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 CRB3Q9BUF7 120 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 GREM2Q9H772 168 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 TPCN1Q9ULQ1 816 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 NAP1L2Q9ULW6 460 aaPredicted RBP3.98□□□□□ -1.77
CD44-229ENST00000528672 GTF2A1LQ9UNN4 478 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 SNX13Q9Y5W8 968 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 NR2E3Q9Y5X4 410 aa3.98□□□□□ -1.77
CD44-229ENST00000528672 A0A088AWK7 358 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 hCG_1642624A0A1W2PR95 340 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 PMS2P1A4D2B8 440 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 K7ESM1 405 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 SLC16A6O15403 523 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 NRP2O60462 931 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 ALDH1A2O94788 518 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 MYF5P13349 255 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 MAP2K6P52564 334 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 BPIFB4P59827 614 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 MAP3K12Q12852 859 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 USP10Q14694 798 aaKnown RBP3.97□□□□□ -1.77
CD44-229ENST00000528672 TBC1D10BQ4KMP7 808 aaPredicted RBP3.97□□□□□ -1.77
CD44-229ENST00000528672 CCDC178Q5BJE1 867 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 ZMAT1Q5H9K5 638 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 MFSD14BQ5SR56 506 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 PRAMEF14Q5SWL7 426 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 SLFN13Q68D06 897 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 SPTY2D1Q68D10 685 aaPredicted RBP3.97□□□□□ -1.77
CD44-229ENST00000528672 CCDC70Q6NSX1 233 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 LIMS2Q7Z4I7 341 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 DRC7Q8IY82 874 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 SH2D3CQ8N5H7 860 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 GPATCH11Q8N954 259 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 PLA2G15Q8NCC3 412 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 LPPQ93052 612 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 PHKBQ93100 1093 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 TRIM63Q969Q1 353 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 LRRC37BQ96QE4 947 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 VRK1Q99986 396 aaPredicted RBP3.97□□□□□ -1.77
CD44-229ENST00000528672 C7orf25Q9BPX7 421 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 CARD11Q9BXL7 1154 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 LRRC27Q9C0I9 530 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 WDR12Q9GZL7 423 aaKnown RBP3.97□□□□□ -1.77
CD44-229ENST00000528672 VPS11Q9H270 941 aa3.97□□□□□ -1.77
CD44-229ENST00000528672 ARMT1Q9H993 441 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms