RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 HOXB3P14651 431 aaPredicted RBP12.88□□□□□ -0.35
SDCBP-211ENST00000523441 GJA1P17302 382 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 PTPN2P17706 415 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 GLRA2P23416 452 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 TKTP29401 623 aaKnown RBP12.88□□□□□ -0.35
SDCBP-211ENST00000523441 HOXA9P31269 272 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 ELF1P32519 619 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 VIPR2P41587 438 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 CXCL12P48061 93 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 CCR3P51677 355 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 STK3Q13188 491 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 PPP2R5CQ13362 524 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 CSRP2Q16527 193 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 TRIM22Q8IYM9 498 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 ELSPBP1Q96BH3 223 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 ZFP14Q9HCL3 533 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 SH2B1Q9NRF2 756 aaPredicted RBP12.88□□□□□ -0.35
SDCBP-211ENST00000523441 KCNH3Q9ULD8 1083 aa12.88□□□□□ -0.35
SDCBP-211ENST00000523441 CCDC194A0A1B0GVG4 234 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 TTLL13PA6NNM8 815 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 PTGESO14684 152 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 TBX3O15119 743 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 USO1O60763 962 aaKnown RBP12.87□□□□□ -0.35
SDCBP-211ENST00000523441 RECQL4O94761 1208 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 IFNAR1P17181 557 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 BRCC3P46736 316 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 SOX9P48436 509 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 RAB33AQ14088 237 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 EPHA7Q15375 998 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 C4orf19Q8IY42 314 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 GPR65Q8IYL9 337 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 HS6ST3Q8IZP7 471 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 FAM160A2Q8N612 972 aaPredicted RBP12.87□□□□□ -0.35
SDCBP-211ENST00000523441 C12orf50Q8NA57 414 aaPredicted RBP12.87□□□□□ -0.35
SDCBP-211ENST00000523441 ZSWIM3Q96MP5 696 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 ARRDC1-AS1Q9H2J1 176 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 SMOC1Q9H4F8 434 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 ZSWIM4Q9H7M6 989 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 CYP4F11Q9HBI6 524 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 GOLGA2P5Q9HBQ8 144 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 GPRC5CQ9NQ84 441 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 SH3GLB2Q9NR46 395 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 RXFP3Q9NSD7 469 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 GDE1Q9NZC3 331 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 FRYQ5TBA9 3013 aa12.87□□□□□ -0.35
SDCBP-211ENST00000523441 CNOT1A5YKK6 2376 aaKnown RBP12.86□□□□□ -0.35
SDCBP-211ENST00000523441 GREB1Q4ZG55 1949 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 SLC38A8A6NNN8 435 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 CPLX1O14810 134 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 B3GAT3O94766 335 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PRKCBP05771 671 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 MYL4P12829 197 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 FCARP24071 287 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PDIA3P30101 505 aaKnown RBP12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PXNP49023 591 aaPredicted RBP12.86□□□□□ -0.35
SDCBP-211ENST00000523441 CLCNKBP51801 687 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 GAS6Q14393 721 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 UVSSAQ2YD98 709 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PDXDC1Q6P996 788 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 VITQ6UXI7 678 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.86□□□□□ -0.35
SDCBP-211ENST00000523441 Q6ZS52 159 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 KRT25Q7Z3Z0 450 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 CSGALNACT1Q8TDX6 532 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 PIGOQ8TEQ8 1089 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 DNASE1L2Q92874 299 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 IRF7Q92985 503 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 SLITRK6Q9H5Y7 841 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 ZNF334Q9HCZ1 680 aaPredicted RBP12.86□□□□□ -0.35
SDCBP-211ENST00000523441 C2orf42Q9NWW7 574 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 MTRRQ9UBK8 725 aa12.86□□□□□ -0.35
SDCBP-211ENST00000523441 CEP295Q9C0D2 2601 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 A0A1B0GUA9 196 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 ZNF263O14978 683 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 RPS6KB1P23443 525 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 ARL2P36404 184 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 CCR2P41597 374 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 KPNA1P52294 538 aaPredicted RBP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 ELAVL2Q12926 359 aaKnown RBP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PCBP1Q15365 356 aaKnown RBP eCLIP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PPP4R3AQ6IN85 833 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PIK3AP1Q6ZUJ8 805 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PDZD4Q76G19 769 aaPredicted RBP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 NEK8Q86SG6 692 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 YAF2Q8IY57 180 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 HAS1Q92839 578 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 DDX27Q96GQ7 796 aaKnown RBP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 FAM20AQ96MK3 541 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 EIF2AK1Q9BQI3 630 aaKnown RBP12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PDZD7Q9H5P4 517 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 KCNMB3Q9NPA1 279 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 GJB4Q9NTQ9 266 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 PPME1Q9Y570 386 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 SNX14Q9Y5W7 946 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 ATG2BQ96BY7 2078 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 ATRXP46100 2492 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 F5P12259 2224 aa12.85□□□□□ -0.35
SDCBP-211ENST00000523441 WDR27A2RRH5 827 aa12.84□□□□□ -0.35
SDCBP-211ENST00000523441 FAM205CA6NFA0 338 aa12.84□□□□□ -0.35
SDCBP-211ENST00000523441 C1QTNF9BB2RNN3 333 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms