RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TCERG1LQ5VWI1 586 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CEP135Q66GS9 1140 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 TRAF7Q6Q0C0 670 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CCDC186Q7Z3E2 898 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 C4orf32Q8N8J7 132 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 LINC00301Q8NCQ3 95 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 STKLD1Q8NE28 680 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 DHX33Q9H6R0 707 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PUF60Q9UHX1 559 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 KCNH3Q9ULD8 1083 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ITM2BQ9Y287 266 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CACNA1GO43497 2377 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 GPR179Q6PRD1 2367 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 IGKV6D-21A0A0A0MT36 114 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 MYMKA6NI61 221 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 HIDE1A8MVS5 230 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 SCAMP3O14828 347 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CXCL14O95715 111 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 RPSAP08865 295 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 SYKP43405 635 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PTPN11Q06124 597 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 MXD4Q14582 209 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 C1orf53Q5VUE5 145 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 NOTUMQ6P988 496 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PRSS55Q6UWB4 352 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CCDC73Q6ZRK6 1079 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ECHDC2Q86YB7 292 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 TRIM42Q8IWZ5 723 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CXorf38Q8TB03 319 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PARD3BQ8TEW8 1205 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 C18orf25Q96B23 403 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 FAM213AQ9BRX8 229 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ZSCAN16Q9H4T2 348 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 RABEP2Q9H5N1 569 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PANK4Q9NVE7 773 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CFAP45Q9UL16 551 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 FAN1Q9Y2M0 1017 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ZDHHC9Q9Y397 364 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 PAXBP1Q9Y5B6 917 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 EIF3CLB5ME19 914 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 FGF18O76093 207 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CAVIN2O95810 425 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ITGB1P05556 798 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 MAGEA9P43362 315 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 TRAPPC10P48553 1259 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 NDUFA8P51970 172 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ERVFC1P60507 584 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 DLX2Q07687 328 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 CUL4BQ13620 913 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 KCNT2Q6UVM3 1135 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ADGRD2Q7Z7M1 963 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ZNF397Q8NF99 534 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 LEO1Q8WVC0 666 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 RUFY1Q96T51 708 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 EIF3CQ99613 913 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 MSTO1Q9BUK6 570 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 TRIM4Q9C037 500 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 ADAMTS10Q9H324 1103 aa8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 FBXO2Q9UK22 296 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-219ENST00000514096 B4GALT3O60512 393 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ZNF189O75820 626 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 EYA4O95677 639 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 KLRC2P26717 231 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 YARSP54577 528 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 NUCB2P80303 420 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 KRT17Q04695 432 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC39A14Q15043 492 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ELF2Q15723 593 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 CLLU1OSQ5K130 101 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 SHC4Q6S5L8 630 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 URGCPQ8TCY9 931 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 CTNNBL1Q8WYA6 563 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 NT5C3AQ9H0P0 336 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 SLITRK6Q9H5Y7 841 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 PARVGQ9HBI0 331 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 TBC1D13Q9NVG8 400 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 PCDHB13Q9Y5F0 798 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 TSPAN1O60635 241 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 DDHD2O94830 711 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 STBD1O95210 358 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ABL1P00519 1130 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ALDH2P05091 517 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 CASP5P51878 434 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 PNOCQ13519 176 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 NOMO2Q5JPE7 1267 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 FAM171A1Q5VUB5 890 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 MOXD1Q6UVY6 613 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 FAM114A1Q8IWE2 563 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 TTC30BQ8N4P2 665 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 RIN2Q8WYP3 895 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 KIF12Q96FN5 646 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 PIDD1Q9HB75 910 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 ERVK-5Q9HDB9 667 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 TUFT1Q9NNX1 390 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 MYO10Q9HD67 2058 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 A0A1B0GUA9 196 aa8.53□□□□□ -1.04
LIMCH1-219ENST00000514096 SH3BP5O60239 455 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms