RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 REV3LO60673 3130 aa10.66□□□□□ -0.7
TOPBP1-209ENST00000513818 EYSQ5T1H1 3165 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 TRANK1O15050 2925 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PTPRJQ12913 1337 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 SMIM28A0A1B0GU29 152 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 TTC26A0AVF1 554 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PDXKO00764 312 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PSMA7O14818 248 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 CALUO43852 315 aaPredicted RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 EXOC3O60645 756 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 NR2F2P24468 414 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 OR1G1P47890 313 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 BCAR1P56945 870 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 NLRP12P59046 1061 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 STIM1Q13586 685 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 NAB2Q15742 525 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 SNRNP35Q16560 246 aaKnown RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 KLHL40Q2TBA0 621 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 ANKRD40Q6AI12 368 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 SCARA3Q6AZY7 606 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 C11orf57Q6ZUT1 292 aaPredicted RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 TRIML1Q8N9V2 468 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 XXYLT1Q8NBI6 393 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 COLGALT1Q8NBJ5 622 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PLEKHO2Q8TD55 490 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 CCDC127Q96BQ5 260 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 FAM193BQ96PV7 902 aaPredicted RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PPP1R10Q96QC0 940 aaKnown RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 TGS1Q96RS0 853 aaKnown RBP10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 ZNF576Q9H609 170 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PDE11AQ9HCR9 933 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 UBN1Q9NPG3 1134 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 CNTN3Q9P232 1028 aa10.65□□□□□ -0.7
TOPBP1-209ENST00000513818 PPEF2O14830 753 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 INPPL1O15357 1258 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 AKAP3O75969 853 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 KIF20AO95235 890 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 KIF4AO95239 1232 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 ITGB1P05556 798 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 THP07101 528 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 GALTP07902 379 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 LAG3P18627 525 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 CCNE1P24864 410 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 ERVK-21P61565 698 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 DSC1Q08554 894 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 PAK1Q13153 545 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 EPC2Q52LR7 807 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 COBLL1Q53SF7 1204 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 XKR4Q5GH76 650 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 ZNF697Q5TEC3 545 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 CENPPQ6IPU0 288 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 KCNT2Q6UVM3 1135 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 ALKAL1Q6UXT8 129 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 FAM43BQ6ZT52 329 aaPredicted RBP10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 C12orf56Q8IXR9 622 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 COLGALT2Q8IYK4 626 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 GOLGA5Q8TBA6 731 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 ZNF558Q96NG5 402 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 MED15Q96RN5 788 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 TSG101Q99816 390 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 DUSP9Q99956 384 aaKnown RBP10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 GZF1Q9H116 711 aaPredicted RBP10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 PRDM12Q9H4Q4 367 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 DMAC2Q9NW81 257 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 MARCH5Q9NX47 278 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 TRAF3IP3Q9Y228 551 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 PCDHGC5Q9Y5F6 944 aa10.64□□□□□ -0.71
TOPBP1-209ENST00000513818 SYCE3A1L190 88 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 ZNF233A6NK53 670 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 I3L4J1 428 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 NRP1O14786 923 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 LDHAP00338 332 aaKnown RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TRIM49P0CI25 452 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TRIM49CP0CI26 452 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 DLATP10515 647 aaKnown RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 KCNE1P15382 129 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 PTMSP20962 102 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 CLCNKBP51801 687 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 DLG4P78352 724 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TFAMQ00059 246 aaKnown RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 CYP24A1Q07973 514 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TUSC3Q13454 348 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 GRIN2CQ14957 1233 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TMEM132DQ14C87 1099 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 KYAT1Q16773 422 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 TTI2Q6NXR4 508 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 SASS6Q6UVJ0 657 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 FAM186BQ8IYM0 893 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 SLC39A11Q8N1S5 342 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 KLHL23Q8NBE8 558 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 C3orf58Q8NDZ4 430 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 FBXO22Q8NEZ5 403 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 OR5B17Q8NGF7 314 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 CLP1Q92989 425 aaKnown RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 SYAP1Q96A49 352 aaPredicted RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 DHTKD1Q96HY7 919 aaPredicted RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 FBXL18Q96ME1 805 aa10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 POP1Q99575 1024 aaKnown RBP10.63□□□□□ -0.71
TOPBP1-209ENST00000513818 MTMR12Q9C0I1 747 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms