RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 TRPV2Q9Y5S1 764 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 UBA6A0AVT1 1052 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 H0Y626 953 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 BUB1BO60566 1050 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 TDP2O95551 362 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 THP07101 528 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ACTR2P61160 394 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 RPS6P62753 249 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 ROR1Q01973 937 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PID1Q7Z2X4 250 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SUDS3Q9H7L9 328 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 MRPL40Q9NQ50 206 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 HDAC6Q9UBN7 1215 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 STK39Q9UEW8 545 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PTPN22Q9Y2R2 807 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.49□□□□□ -1.69
VCAN-209ENST00000513016 RIMS1Q86UR5 1692 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 DFFAO00273 331 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 EXTL3O43909 919 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 GADD45BO75293 160 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 CKMP06732 381 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ATICP31939 592 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 EIF4A3P38919 411 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 ARHGDIAP52565 204 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 RESTQ13127 1097 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 NCOA4Q13772 614 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 KLHL38Q2WGJ6 581 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD20A4Q4UJ75 823 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD20A8PQ5CZ79 823 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 TCP11X2Q5H9J9 407 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD20A2Q5SQ80 823 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ANKRD20A1Q5TYW2 823 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 RESP18Q5W5W9 173 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 MTHFD1LQ6UB35 978 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 ATPAF2Q8N5M1 289 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 OR6P1Q8NGX9 317 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 MGARPQ8TDB4 240 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SAAL1Q96ER3 474 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 TSPAN17Q96FV3 270 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SYNPO2Q9UMS6 1093 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 VPS9D1Q9Y2B5 631 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 HEY1Q9Y5J3 304 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 POLRMTO00411 1230 aaKnown RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 F9P00740 461 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CDC25AP30304 524 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CASP14P31944 242 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PSEN2P49810 448 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CUL4AQ13619 759 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 PDIA6Q15084 440 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 MOXD1Q6UVY6 613 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 METTL7BQ6UX53 244 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SZRD1Q7Z422 152 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 GMCL1P1Q8NEA9 526 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 GDAP1L1Q96MZ0 367 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CCSER1Q9C0I3 900 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 SENP6Q9GZR1 1112 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 ALDH8A1Q9H2A2 487 aaPredicted RBP4.49□□□□□ -1.69
VCAN-209ENST00000513016 CPVLQ9H3G5 476 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 COG4Q9H9E3 785 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 LMBRD1Q9NUN5 540 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 MRFAP1Q9Y605 127 aa4.49□□□□□ -1.69
VCAN-209ENST00000513016 CFAP69A5D8W1 941 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 F5H5T6 163 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 C2CD2LO14523 706 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 P4HA2O15460 535 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 NMT2O60551 498 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 GUCY2FP51841 1108 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 TMEM62Q0P6H9 643 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 DGKZQ13574 1117 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 GLE1Q53GS7 698 aaKnown RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 GLYCTKQ8IVS8 523 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 FBXO32Q969P5 355 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 AGBL1Q96MI9 1066 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 ZNF558Q96NG5 402 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 DCLK3Q9C098 648 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 MAN1C1Q9NR34 630 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 ABI2Q9NYB9 513 aaPredicted RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 PLA2G4CQ9UP65 541 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 PCDHA13Q9Y5I0 950 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 B3GAT3O94766 335 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 CCT5P48643 541 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 TUFMP49411 452 aaKnown RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 OCRLQ01968 901 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 ACVR2BQ13705 512 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 HIST2H2ACQ16777 129 aaPredicted RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 TTLL9Q3SXZ7 439 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 HIST2H2AA3Q6FI13 130 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 ATG9AQ7Z3C6 839 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 FIBCD1Q8N539 461 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 POLR3CQ9BUI4 534 aaPredicted RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 FTHL17Q9BXU8 183 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 WNT8AQ9H1J5 351 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 NSMCE4AQ9NXX6 385 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 DIP2CQ9Y2E4 1556 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 FAM205AQ6ZU69 1335 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 OGTO15294 1046 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 NPM3O75607 178 aaKnown RBP4.48□□□□□ -1.69
VCAN-209ENST00000513016 BRAFP15056 766 aa4.48□□□□□ -1.69
VCAN-209ENST00000513016 CYP11B2P19099 503 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms