RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 CHST7Q9NS84 486 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 ZNFX1Q9P2E3 1918 aaKnown RBP18.9■□□□□ 0.62
NUP54-205ENST00000507257 MPHOSPH10O00566 681 aaKnown RBP18.9■□□□□ 0.62
NUP54-205ENST00000507257 UFL1O94874 794 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 ROR2Q01974 943 aaKnown RBP18.9■□□□□ 0.62
NUP54-205ENST00000507257 PPP3CAQ08209 521 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 ZNF746Q6NUN9 644 aaPredicted RBP18.9■□□□□ 0.62
NUP54-205ENST00000507257 IRGCQ6NXR0 463 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 EGFL6Q8IUX8 553 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 CFAP57Q96MR6 1250 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 TTC25Q96NG3 672 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 TSC22D3Q99576 134 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 KIAA1683Q9H0B3 1180 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 TMEM206Q9H813 350 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 CYLDQ9NQC7 956 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 LRRC4BQ9NT99 713 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 STOML1Q9UBI4 398 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 HAO1Q9UJM8 370 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 GGA1Q9UJY5 639 aa18.9■□□□□ 0.62
NUP54-205ENST00000507257 ENO4A6NNW6 628 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 C2CD2LO14523 706 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 PSMD10O75832 226 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 TARSP26639 723 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 PTDSS1P48651 473 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 CDR2Q01850 454 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 RNASELQ05823 741 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 PICALMQ13492 652 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 ODR4Q5SWX8 454 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 CWF19L1Q69YN2 538 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 FAM47EQ6ZV65 393 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 ANKS1BQ7Z6G8 1248 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 FBXO11Q86XK2 927 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 DNAJC9Q8WXX5 260 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 FAM136AQ96C01 138 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 GPR101Q96P66 508 aaPredicted RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 SSU72Q9NP77 194 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 DDX4Q9NQI0 724 aaKnown RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 AVENQ9NQS1 362 aaPredicted RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 ETAA1Q9NY74 926 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 ZMYND8Q9ULU4 1186 aaPredicted RBP18.89■□□□□ 0.61
NUP54-205ENST00000507257 ATRNL1Q5VV63 1379 aa18.89■□□□□ 0.61
NUP54-205ENST00000507257 HLA-DOAP06340 250 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 ADRA2BP18089 450 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 ADCY8P40145 1251 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 PAPOLAP51003 745 aaKnown RBP18.88■□□□□ 0.61
NUP54-205ENST00000507257 CCNG2Q16589 344 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 C1orf220Q5T0J3 134 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 SLFN13Q68D06 897 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 ACAD10Q6JQN1 1059 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 LONP2Q86WA8 852 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 SYCP3Q8IZU3 236 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 CCDC24Q8N4L8 307 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 ZCCHC9Q8N567 271 aaKnown RBP18.88■□□□□ 0.61
NUP54-205ENST00000507257 SLC5A5Q92911 643 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 DYDC2Q96IM9 177 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 TUBB6Q9BUF5 446 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 ATMINO43313 823 aaPredicted RBP18.88■□□□□ 0.61
NUP54-205ENST00000507257 MARK3P27448 753 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 MFAP3P55082 362 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 KLF1Q13351 362 aaPredicted RBP18.88■□□□□ 0.61
NUP54-205ENST00000507257 CPNE8Q86YQ8 564 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 KSR1Q8IVT5 923 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 TPH2Q8IWU9 490 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 GALNT15Q8N3T1 639 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 PARD3BQ8TEW8 1205 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 BTBD6Q96KE9 485 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 VCXQ9H320 206 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 PAPOLBQ9NRJ5 636 aaKnown RBP18.88■□□□□ 0.61
NUP54-205ENST00000507257 TBK1Q9UHD2 729 aa18.88■□□□□ 0.61
NUP54-205ENST00000507257 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.88■□□□□ 0.61
NUP54-205ENST00000507257 A0A1W2PRG0 241 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 FOXO6A8MYZ6 492 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 GCLCP48506 637 aaPredicted RBP18.87■□□□□ 0.61
NUP54-205ENST00000507257 PRELPP51888 382 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 DLG4P78352 724 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 MXRA7P84157 204 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 OCRLQ01968 901 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 DNAJC3Q13217 504 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 SNX1Q13596 522 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 TRIM68Q6AZZ1 485 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 CNBD1Q8NA66 436 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 ZNF333Q96JL9 665 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 KREMEN1Q96MU8 473 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 DENND2DQ9H6A0 471 aaPredicted RBP18.87■□□□□ 0.61
NUP54-205ENST00000507257 CPSF2Q9P2I0 782 aaKnown RBP18.87■□□□□ 0.61
NUP54-205ENST00000507257 LRCH1Q9Y2L9 728 aa18.87■□□□□ 0.61
NUP54-205ENST00000507257 KCNQ2O43526 872 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 GSTA2P09210 222 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 CYP11B1P15538 503 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 ZNF76P36508 570 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 VHLP40337 213 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 MAGEA4P43358 317 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 CCDC142Q17RM4 750 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 ZC3H12AQ5D1E8 599 aaKnown RBP18.86■□□□□ 0.61
NUP54-205ENST00000507257 LRRC8CQ8TDW0 803 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 ZBTB10Q96DT7 871 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 CHORDC1Q9UHD1 332 aaPredicted RBP18.86■□□□□ 0.61
NUP54-205ENST00000507257 SIGLEC16A6NMB1 481 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 RRM1P23921 792 aa18.86■□□□□ 0.61
NUP54-205ENST00000507257 GCAP28676 217 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms