RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZNF197O14709 1029 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 JAK2O60674 1132 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 SDHBP21912 280 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 GPC5P78333 572 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 PDIA5Q14554 519 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 UBXN2BQ14CS0 331 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 ZNF528Q3MIS6 628 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 ZNF568Q3ZCX4 644 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 PARM1Q6UWI2 310 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 GPR161Q8N6U8 529 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 FGF14Q92915 247 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 BHMT2Q9H2M3 363 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 C17orf75Q9HAS0 396 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 DNM3Q9UQ16 869 aa23.09■■□□□ 1.29
SQSTM1-210ENST00000506042 MIA3Q5JRA6 1907 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 LAD1O00515 517 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 SPTLC1O15269 473 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 SP9P0CG40 484 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 PTPN2P17706 415 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 FXR2P51116 673 aaKnown RBP eCLIP23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 ZNF174Q15697 407 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 SLC44A4Q53GD3 710 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 ZBTB41Q5SVQ8 909 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 KRT79Q5XKE5 535 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 ZSCAN31Q96LW9 406 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 PPP1R10Q96QC0 940 aaKnown RBP23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 TIPINQ9BVW5 301 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 R4GN57 208 aa23.08■■□□□ 1.29
SQSTM1-210ENST00000506042 PTPRZ1P23471 2315 aaPredicted RBP23.08■■□□□ 1.28
SQSTM1-210ENST00000506042 MYH15Q9Y2K3 1946 aa23.08■■□□□ 1.28
SQSTM1-210ENST00000506042 SYN3O14994 580 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 ECI2O75521 394 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 RPL9P32969 192 aaKnown RBP23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 GRM5P41594 1212 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 CLCNKBP51801 687 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 GUCY1B3Q02153 619 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 STRN3Q13033 797 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 SNW1Q13573 536 aaKnown RBP23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 UPP1Q16831 310 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 IQCEQ6IPM2 695 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 ZNF461Q8TAF7 563 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 SNX29Q8TEQ0 813 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 ATRIPQ8WXE1 791 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 CACNG4Q9UBN1 327 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 MAFFQ9ULX9 164 aa23.07■■□□□ 1.28
SQSTM1-210ENST00000506042 LARGE1O95461 756 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 SMTNP53814 917 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 GLRA4Q5JXX5 417 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 ZNF852Q6ZMS4 543 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 LEMD2Q8NC56 503 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 BSNDQ8WZ55 320 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 ACAP3Q96P50 834 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 FOXQ1Q9C009 403 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 TMEM134Q9H6X4 195 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 KMT5AQ9NQR1 393 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 AVENQ9NQS1 362 aaPredicted RBP23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 DDX19AQ9NUU7 478 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 KIAA1024Q9UPX6 916 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 USP34Q70CQ2 3546 aa23.06■■□□□ 1.28
SQSTM1-210ENST00000506042 DTNBO60941 627 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 NTHL1P78549 312 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 NAB2Q15742 525 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 CYP4A22Q5TCH4 519 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 EEF1DP3Q658K8 133 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 TPGS2Q68CL5 300 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 NPAS3Q8IXF0 933 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 KCTD17Q8N5Z5 321 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 APPL2Q8NEU8 664 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 DNASE1L2Q92874 299 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 KXD1Q9BQD3 176 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 OXCT2Q9BYC2 517 aaPredicted RBP23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 SH2B1Q9NRF2 756 aaPredicted RBP23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 DLGAP2Q9P1A6 1054 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 NCDNQ9UBB6 729 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 PCDHGA2Q9Y5H1 932 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 FAM186AA6NE01 2351 aa23.05■■□□□ 1.28
SQSTM1-210ENST00000506042 SMIM28A0A1B0GU29 152 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 FAM170BA6NMN3 283 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 H0YCG3 227 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 MAN2B1O00754 1011 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 WNT7AO00755 349 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 MCF2P10911 925 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 TKTP29401 623 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 MARCKSP29966 332 aaPredicted RBP23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 PEX3P56589 373 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 PUM1Q14671 1186 aaKnown RBP eCLIP23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 ZNF280DQ6N043 979 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 FBXO18Q8NFZ0 1043 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 IER2Q9BTL4 223 aa23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 DDX23Q9BUQ8 820 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-210ENST00000506042 PODXLO00592 558 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 MICAL2O94851 1124 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 RHOP08100 348 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 SLC8B1Q6J4K2 584 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 PDZD4Q76G19 769 aaPredicted RBP23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 CCDC83Q8IWF9 413 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 KIAA2013Q8IYS2 634 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 ITFG1Q8TB96 612 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 ELSPBP1Q96BH3 223 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 KIFC3Q9BVG8 833 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms