RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CCDC113Q9H0I3 377 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 BRMS1Q9HCU9 246 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 HEBP1Q9NRV9 189 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 SMG5Q9UPR3 1016 aaKnown RBP16.22■□□□□ 0.19
TRAF4-212ENST00000498540 MRPS23Q9Y3D9 190 aaKnown RBP16.22■□□□□ 0.19
TRAF4-212ENST00000498540 SPTBN2O15020 2390 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 COL4A2P08572 1712 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 CACNA1BQ00975 2339 aa16.22■□□□□ 0.19
TRAF4-212ENST00000498540 BTBD18B2RXH4 712 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 TMEM189-UBE2V1I3L0A0 370 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 I3L4J1 428 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 LILRB5O75023 590 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 MED24O75448 989 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 ECI2O75521 394 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 B3GAT3O94766 335 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 RHOP08100 348 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 CEBPBP17676 345 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 TKTP29401 623 aaKnown RBP16.21■□□□□ 0.19
TRAF4-212ENST00000498540 CLCNKBP51801 687 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 FZD5Q13467 585 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 MAPK6Q16659 721 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 CATSPER3Q86XQ3 398 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 C3orf58Q8NDZ4 430 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 WASF1Q92558 559 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 NELL1Q92832 810 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 DDX27Q96GQ7 796 aaKnown RBP16.21■□□□□ 0.19
TRAF4-212ENST00000498540 CNTNAP3BQ96NU0 1288 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 PPP1R10Q96QC0 940 aaKnown RBP16.21■□□□□ 0.19
TRAF4-212ENST00000498540 ADPGKQ9BRR6 497 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 CNTNAP3Q9BZ76 1288 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 C2orf40Q9H1Z8 148 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 EPC1Q9H2F5 836 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 TMEM60Q9H2L4 133 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 GOLGA2P5Q9HBQ8 144 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 PRMT8Q9NR22 394 aaPredicted RBP16.21■□□□□ 0.19
TRAF4-212ENST00000498540 ZSCAN32Q9NX65 697 aa16.21■□□□□ 0.19
TRAF4-212ENST00000498540 EPG5Q9HCE0 2579 aa16.21■□□□□ 0.18
TRAF4-212ENST00000498540 ACKR2O00590 384 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 RPS9P46781 194 aaKnown RBP16.2■□□□□ 0.18
TRAF4-212ENST00000498540 RBM25P49756 843 aaKnown RBP16.2■□□□□ 0.18
TRAF4-212ENST00000498540 FOSBP53539 338 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 TANGO2Q6ICL3 276 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 BORCS6Q96GS4 357 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 KIFC3Q9BVG8 833 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 GDE1Q9NZC3 331 aa16.2■□□□□ 0.18
TRAF4-212ENST00000498540 TICRRQ7Z2Z1 1910 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 FCARP24071 287 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 BRCC3P46736 316 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 ATXN1P54253 815 aaKnown RBP16.19■□□□□ 0.18
TRAF4-212ENST00000498540 MTAPQ13126 283 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 UPP1Q16831 310 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 PADI6Q6TGC4 694 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 ZNF852Q6ZMS4 543 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 RTL10Q7L3V2 364 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 DIS3L2Q8IYB7 885 aaKnown RBP16.19■□□□□ 0.18
TRAF4-212ENST00000498540 NECAB1Q8N987 351 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 DEPTORQ8TB45 409 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 NELL2Q99435 816 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 TUFT1Q9NNX1 390 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 BACE2Q9Y5Z0 518 aa16.19■□□□□ 0.18
TRAF4-212ENST00000498540 KMT2BQ9UMN6 2715 aaPredicted RBP16.19■□□□□ 0.18
TRAF4-212ENST00000498540 TPRP12270 2363 aaKnown RBP16.19■□□□□ 0.18
TRAF4-212ENST00000498540 NRG2O14511 850 aaPredicted RBP16.18■□□□□ 0.18
TRAF4-212ENST00000498540 NCAM2O15394 837 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 LARGE1O95461 756 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 CYP11B2P19099 503 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 NAMPTP43490 491 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ROR1Q01973 937 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 SOX4Q06945 474 aaPredicted RBP16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ADCY1Q08828 1119 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 GRM2Q14416 872 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 DCAF4L1Q3SXM0 396 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 NT5DC1Q5TFE4 455 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ANKS3Q6ZW76 656 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ZNF687Q8N1G0 1237 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 GPR161Q8N6U8 529 aaKnown RBP16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ELSPBP1Q96BH3 223 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 TCEAL4Q96EI5 215 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 NACC1Q96RE7 527 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 POLD4Q9HCU8 107 aa16.18■□□□□ 0.18
TRAF4-212ENST00000498540 AVENQ9NQS1 362 aaPredicted RBP16.18■□□□□ 0.18
TRAF4-212ENST00000498540 ARHGEF37A1IGU5 675 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 WDR27A2RRH5 827 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 TGM1P22735 817 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 MCM7P33993 719 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 PRSS36Q5K4E3 855 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 ATF7IP2Q5U623 682 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 SLC8B1Q6J4K2 584 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 CEP120Q8N960 986 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 ZNF461Q8TAF7 563 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 DNASE1L2Q92874 299 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 SECISBP2LQ93073 1101 aaKnown RBP16.17■□□□□ 0.18
TRAF4-212ENST00000498540 UROC1Q96N76 676 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 CORO1BQ9BR76 489 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 POLR3CQ9BUI4 534 aaPredicted RBP16.17■□□□□ 0.18
TRAF4-212ENST00000498540 PARD6AQ9NPB6 346 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 CDV3Q9UKY7 258 aaKnown RBP16.17■□□□□ 0.18
TRAF4-212ENST00000498540 USP18Q9UMW8 372 aa16.17■□□□□ 0.18
TRAF4-212ENST00000498540 NDRG2Q9UN36 371 aaKnown RBP16.17■□□□□ 0.18
TRAF4-212ENST00000498540 MRPS17Q9Y2R5 130 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms