RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 JADE2Q9NQC1 790 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 RIC8BQ9NVN3 520 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 ARHGAP20Q9P2F6 1191 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 NDOR1Q9UHB4 597 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 COG5Q9UP83 839 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 MRPS23Q9Y3D9 190 aaKnown RBP4.94□□□□□ -1.62
USP54-217ENST00000498213 PCDHA8Q9Y5H6 950 aa4.94□□□□□ -1.62
USP54-217ENST00000498213 ZNF318Q5VUA4 2279 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 PLATP00750 562 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 CKMP06732 381 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 DNM2P50570 870 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 MLLT6P55198 1093 aaPredicted RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 FPGSQ05932 587 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 SERINC3Q13530 473 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 GPR19Q15760 415 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 SMAD2Q15796 467 aaKnown RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 CRY1Q16526 586 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 SKIDA1Q1XH10 827 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 PHF19Q5T6S3 580 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 MAP3K21Q5TCX8 1036 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 FOXB2Q5VYV0 432 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 BTBD8Q5XKL5 378 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 CD276Q5ZPR3 534 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 GLB1LQ6UWU2 654 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 SLC39A5Q6ZMH5 540 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 ARHGAP36Q6ZRI8 547 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 CERS5Q8N5B7 392 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 ANKRD13CQ8N6S4 541 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 PLBD2Q8NHP8 589 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 SMCR8Q8TEV9 937 aaPredicted RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 FAM89AQ96GI7 184 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 LOXL4Q96JB6 756 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 EXOC2Q96KP1 924 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 PLEKHF1Q96S99 279 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 DNAJC7Q99615 494 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 TDRD3Q9H7E2 651 aaKnown RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 SLC28A3Q9HAS3 691 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 HYPKQ9NX55 129 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 HSPBP1Q9NZL4 362 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 ARHGAP28Q9P2N2 729 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 DBF4Q9UBU7 674 aaPredicted RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 ZNF70Q9UC06 446 aaPredicted RBP4.93□□□□□ -1.62
USP54-217ENST00000498213 MSRAQ9UJ68 235 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 ZFP69BQ9UJL9 534 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 GJD2Q9UKL4 321 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 ZDHHC9Q9Y397 364 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 CACNA1HO95180 2353 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 LAMB1P07942 1786 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 XDHP47989 1333 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 MAST4O15021 2626 aa4.93□□□□□ -1.62
USP54-217ENST00000498213 FAM186AA6NE01 2351 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 LRRC37AA6NMS7 1700 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 DDX60Q8IY21 1712 aaKnown RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 FAM221BA6H8Z2 402 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 EFCAB14O75071 495 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ANXA1P04083 346 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 PYGMP11217 842 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 TLE2Q04725 743 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 PPATQ06203 517 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 RBL2Q08999 1139 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 AIMP1Q12904 312 aaKnown RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 GJC2Q5T442 439 aaPredicted RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 GADL1Q6ZQY3 521 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ARHGEF18Q6ZSZ5 1173 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 MIGA2Q7L4E1 593 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 MCM10Q7L590 875 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 KLHL36Q8N4N3 616 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 DTX3Q8N9I9 347 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ZSWIM2Q8NEG5 633 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ZCCHC14Q8WYQ9 949 aaKnown RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 FERMT2Q96AC1 680 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 RMDN1Q96DB5 314 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 YTHDC1Q96MU7 727 aaKnown RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 CERS4Q9HA82 394 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 SFMBT1Q9UHJ3 866 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 SRPK3Q9UPE1 567 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 PCDHA9Q9Y5H5 950 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 MTCH2Q9Y6C9 303 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ATP23Q9Y6H3 246 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 MAP1BP46821 2468 aaKnown RBP4.92□□□□□ -1.62
USP54-217ENST00000498213 CHD9Q3L8U1 2897 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 GVINP1Q7Z2Y8 2422 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 LRRC37A2A6NM11 1700 aa4.92□□□□□ -1.62
USP54-217ENST00000498213 ATRNL1Q5VV63 1379 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 DNAH12Q6ZR08 3092 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 ZNF292O60281 2723 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PRRC2BQ5JSZ5 2229 aaKnown RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 CCDC66A2RUB6 948 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PRAMEF25A6NGN4 478 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 H0Y858 1186 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CHL1O00533 1208 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 LAMTOR5O43504 91 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CRTAMO95727 393 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CHGBP05060 677 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 C6orf222P0C671 652 aaPredicted RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 MYOGP15173 224 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 IL9P15248 144 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PDE6AP16499 860 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PTPN1P18031 435 aaKnown RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 KLRK1P26718 216 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms