RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 LINC01565O15544 149 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 PPP1R37O75864 691 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 B3GAT3O94766 335 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 ADH1AP07327 375 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 MYBP10242 640 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 RPL9P32969 192 aaKnown RBP17.82■□□□□ 0.44
SF3A1-209ENST00000496189 KCNQ1P51787 676 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 FAM160A1Q05DH4 1040 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 PTPN14Q15678 1187 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 XKR4Q5GH76 650 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 KRBA2Q6ZNG9 492 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 HASPINQ8TF76 798 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 AUTS2Q8WXX7 1259 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 BLZF1Q9H2G9 400 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 GOLPH3LQ9H4A5 285 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 EXOC1Q9NV70 894 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 HOOK1Q9UJC3 728 aaKnown RBP17.82■□□□□ 0.44
SF3A1-209ENST00000496189 NUB1Q9Y5A7 615 aa17.82■□□□□ 0.44
SF3A1-209ENST00000496189 PRUNE2Q8WUY3 3088 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 CITO14578 2027 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 TMEM189-UBE2V1I3L0A0 370 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 TULP1O00294 542 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-209ENST00000496189 KIAA0391O15091 583 aaKnown RBP17.81■□□□□ 0.44
SF3A1-209ENST00000496189 KIF4AO95239 1232 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 GARTP22102 1010 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 CLCNKBP51801 687 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 UBE2HP62256 183 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 NAB2Q15742 525 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 CLUL1Q15846 466 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 SLC10A6Q3KNW5 377 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 ARMCX5Q6P1M9 558 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 CLEC17AQ6ZS10 378 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 CEP57Q86XR8 500 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 ADAMTS19Q8TE59 1207 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 RABGGTAQ92696 567 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 STRA6Q9BX79 667 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 DZANK1Q9NVP4 752 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 BARX2Q9UMQ3 279 aaPredicted RBP17.81■□□□□ 0.44
SF3A1-209ENST00000496189 UBQLN1Q9UMX0 589 aaKnown RBP17.81■□□□□ 0.44
SF3A1-209ENST00000496189 STYXL1Q9Y6J8 313 aa17.81■□□□□ 0.44
SF3A1-209ENST00000496189 UBE4BO95155 1302 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 ANKRD63C9JTQ0 380 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 GOLGA6L22H0YM25 854 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 PODXLO00592 558 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 CLASP2O75122 1294 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 TBX10O75333 385 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 PRPF6O94906 941 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 HOXB8P17481 243 aaPredicted RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 TNFSF9P41273 254 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 POU5F1Q01860 360 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 DSG1Q02413 1049 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 SMAD4Q13485 552 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 FAM171A1Q5VUB5 890 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 SLC39A4Q6P5W5 647 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 GPR65Q8IYL9 337 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 FMR1NBQ8N0W7 255 aaPredicted RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 BEST2Q8NFU1 509 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 NOC3LQ8WTT2 800 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 RIN2Q8WYP3 895 aaPredicted RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 UHRF1Q96T88 793 aaPredicted RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 PAAF1Q9BRP4 392 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 TTPALQ9BTX7 342 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 VN1R3Q9BXE9 311 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 GPR62Q9BZJ7 368 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 CPSF3Q9UKF6 684 aaKnown RBP17.8■□□□□ 0.44
SF3A1-209ENST00000496189 MYO7AQ13402 2215 aa17.8■□□□□ 0.44
SF3A1-209ENST00000496189 TTC26A0AVF1 554 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 LACTBL1A8MY62 500 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 F8W810 466 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 DLL1O00548 723 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 KINO60870 393 aaKnown RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 PRPF40AO75400 957 aaKnown RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 KIF20AO95235 890 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 IL18RAPO95256 599 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 BMP1P13497 986 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 LTBRP36941 435 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 ACOT2P49753 483 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CASP5P51878 434 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 PSMD2Q13200 908 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CUL4BQ13620 913 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 UPP1Q16831 310 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CES5AQ6NT32 575 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 TMEM184AQ6ZMB5 413 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 HS2ST1Q7LGA3 356 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 RNF168Q8IYW5 571 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 TIGD1Q96MW7 591 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 ZMAT2Q96NC0 199 aaKnown RBP17.79■□□□□ 0.44
SF3A1-209ENST00000496189 HAPLN2Q9GZV7 340 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CXCL16Q9H2A7 254 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 ASB7Q9H672 318 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 GOLGA2P5Q9HBQ8 144 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CHST7Q9NS84 486 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 CACNG4Q9UBN1 327 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 DERAQ9Y315 318 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 HCFC2Q9Y5Z7 792 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 UNC80Q8N2C7 3258 aa17.79■□□□□ 0.44
SF3A1-209ENST00000496189 GRXCR2A6NFK2 248 aa17.78■□□□□ 0.44
SF3A1-209ENST00000496189 GLP2RO95838 553 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms