RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 DDX27Q96GQ7 796 aaKnown RBP16.48■□□□□ 0.23
USP39-217ENST00000491659 POMKQ9H5K3 350 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 GOLGA2P5Q9HBQ8 144 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 TFIP11Q9UBB9 837 aaKnown RBP16.48■□□□□ 0.23
USP39-217ENST00000491659 MUTYHQ9UIF7 546 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 C5orf42Q9H799 3197 aa16.48■□□□□ 0.23
USP39-217ENST00000491659 TRAPPC3O43617 180 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 C1RP00736 705 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 PIGRP01833 764 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 WEE2P0C1S8 567 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 GAP43P17677 238 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 SP100P23497 879 aaPredicted RBP16.47■□□□□ 0.23
USP39-217ENST00000491659 NMT1P30419 496 aaKnown RBP16.47■□□□□ 0.23
USP39-217ENST00000491659 GTF2BQ00403 316 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 PPP2R3AQ06190 1150 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 SOX4Q06945 474 aaPredicted RBP16.47■□□□□ 0.23
USP39-217ENST00000491659 UPP1Q16831 310 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 SEZ6Q53EL9 994 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 PRSS55Q6UWB4 352 aaPredicted RBP16.47■□□□□ 0.23
USP39-217ENST00000491659 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.47■□□□□ 0.23
USP39-217ENST00000491659 SFR1Q86XK3 245 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 MAP4K3Q8IVH8 894 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 GLYCTKQ8IVS8 523 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 PIK3R5Q8WYR1 880 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 DDX12PQ92771 950 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 HVCN1Q96D96 273 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 SEL1LQ9UBV2 794 aa16.47■□□□□ 0.23
USP39-217ENST00000491659 FAM86C2PA6NEL3 165 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 MYMKA6NI61 221 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 PODXLO00592 558 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 CUTAO60888 179 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 CLTAP09496 248 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 CXCL8P10145 99 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 RPL17P18621 184 aaKnown RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 FOXD4L6Q3SYB3 417 aaPredicted RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 HERC4Q5GLZ8 1057 aaPredicted RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 KANK3Q6NY19 840 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 FOXD4L3Q6VB84 417 aaPredicted RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 C15orf39Q6ZRI6 1047 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 GPR149Q86SP6 731 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 PALB2Q86YC2 1186 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 PDILTQ8N807 584 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 HDAC7Q8WUI4 952 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 ZMAT2Q96NC0 199 aaKnown RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 FIZ1Q96SL8 496 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 MSTO1Q9BUK6 570 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 PANK2Q9BZ23 570 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 HAPLN2Q9GZV7 340 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 ST6GALNAC4Q9H4F1 302 aa16.46■□□□□ 0.23
USP39-217ENST00000491659 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.46■□□□□ 0.23
USP39-217ENST00000491659 ANK1P16157 1881 aa16.46■□□□□ 0.22
USP39-217ENST00000491659 A0A087X0B3 334 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 OGTO15294 1046 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 TGM5O43548 720 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 GPR37L1O60883 481 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 IDEP14735 1019 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 RPL9P32969 192 aaKnown RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 SLC10A6Q3KNW5 377 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 ATL3Q6DD88 541 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 TDRD5Q8NAT2 981 aaKnown RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 C3orf58Q8NDZ4 430 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 CMASQ8NFW8 434 aaPredicted RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 LNX1Q8TBB1 728 aaPredicted RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 KCNG4Q8TDN1 519 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 C18orf25Q96B23 403 aaPredicted RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 LRFN3Q9BTN0 628 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 PLEKHA4Q9H4M7 779 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 MRPL44Q9H9J2 332 aaKnown RBP16.45■□□□□ 0.22
USP39-217ENST00000491659 PLEKHA5Q9HAU0 1116 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 NUB1Q9Y5A7 615 aa16.45■□□□□ 0.22
USP39-217ENST00000491659 MEFVO15553 781 aaPredicted RBP16.44■□□□□ 0.22
USP39-217ENST00000491659 XPOTO43592 962 aaKnown RBP16.44■□□□□ 0.22
USP39-217ENST00000491659 FGFR3P22607 806 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 TNFSF9P41273 254 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 BRCC3P46736 316 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 ZC2HC1CQ53FD0 456 aaPredicted RBP16.44■□□□□ 0.22
USP39-217ENST00000491659 CYP26C1Q6V0L0 522 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 CCDC149Q6ZUS6 474 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 DNAJC19Q96DA6 116 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 KIF12Q96FN5 646 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 LRRC27Q9C0I9 530 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 CUEDC2Q9H467 287 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 RPF1Q9H9Y2 349 aaKnown RBP16.44■□□□□ 0.22
USP39-217ENST00000491659 C11orf16Q9NQ32 467 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 CFAP45Q9UL16 551 aa16.44■□□□□ 0.22
USP39-217ENST00000491659 A0A0B4J269 797 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 CCDC195A0A1B0GUA6 201 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 TTC26A0AVF1 554 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 PRR33A8MZF0 331 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 C2CD4DB7Z1M9 353 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 I3L4J1 428 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 GCNT3O95395 438 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 SPATA31D3P0C874 917 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 MYBP10242 640 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 COL9A1P20849 921 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 TKTP29401 623 aaKnown RBP16.43■□□□□ 0.22
USP39-217ENST00000491659 PKP1Q13835 747 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 LIN9Q5TKA1 542 aa16.43■□□□□ 0.22
USP39-217ENST00000491659 SLFN12LQ6IEE8 588 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms