RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CD302Q8IX05 232 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 KIAA0895Q8NCT3 520 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 C18orf25Q96B23 403 aaPredicted RBP17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 FAM212AQ96EL1 285 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 SAAL1Q96ER3 474 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 TSPAN18Q96SJ8 248 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 PCIF1Q9H4Z3 704 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 TRIP11Q15643 1979 aa17.71■□□□□ 0.43
MSH5-SAPCD1-206ENST00000491552 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HIDE1A8MVS5 230 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TMEM189-UBE2V1I3L0A0 370 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KIAA0391O15091 583 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TGFB1I1O43294 461 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NCK2O43639 380 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EFEMP2O95967 443 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NRIP1P48552 1158 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CLCNKBP51801 687 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 UBE2HP62256 183 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SPAG1Q07617 926 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PNOCQ13519 176 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KCNB1Q14721 858 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 UPP1Q16831 310 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KNOP1Q1ED39 458 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CRELD2Q6UXH1 353 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 RNF168Q8IYW5 571 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HASPINQ8TF76 798 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 DDX27Q96GQ7 796 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CDCA3Q99618 268 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 FAM213AQ9BRX8 229 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 IGFLR1Q9H665 355 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TLE6Q9H808 572 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 AGPAT3Q9NRZ7 376 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 THEGQ9P2T0 379 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TUBGCP4Q9UGJ1 667 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HOOK1Q9UJC3 728 aaKnown RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 COG5Q9UP83 839 aa17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SF3B1O75533 1304 aaKnown RBP eCLIP17.7■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 C2orf71A6NGG8 1288 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PODXLO00592 558 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 XPOTO43592 962 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EXTL3O43909 919 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KINO60870 393 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 B3GAT3O94766 335 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CXCL14O95715 111 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 URODP06132 367 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GTF2F1P35269 517 aaKnown RBP eCLIP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SNRPFP62306 86 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 COL19A1Q14993 1142 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 DUSP6Q16828 381 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 JADE1Q6IE81 842 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HS2ST1Q7LGA3 356 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TAS1R1Q7RTX1 841 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 RBM23Q86U06 439 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GPD1LQ8N335 351 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 MRPL43Q8N983 215 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ZSWIM2Q8NEG5 633 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NOC3LQ8WTT2 800 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 AUTS2Q8WXX7 1259 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HLA-CQ95604 372 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PABPC5Q96DU9 382 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GPR62Q9BZJ7 368 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ASB7Q9H672 318 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CGNQ9P2M7 1197 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 UBQLN1Q9UMX0 589 aaKnown RBP17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 DERAQ9Y315 318 aa17.69■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 FSD2A1L4K1 749 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GOLGA8IPA6NC78 632 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GOLGA8JA6NMD2 632 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PRPF40AO75400 957 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 IL18RAPO95256 599 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CYP3A5P20815 502 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 RPL9P32969 192 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 GLUD2P49448 558 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 TMEM132DQ14C87 1099 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PTPN14Q15678 1187 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ZBTB6Q15916 424 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 DCLRE1AQ6PJP8 1040 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CLEC17AQ6ZS10 378 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 BRSK2Q8IWQ3 736 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ELOA2Q8IYF1 753 aaPredicted RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 EFHBQ8N7U6 833 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 UBE2ZQ9H832 354 aaPredicted RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 MRPL17Q9NRX2 175 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 RMND1Q9NWS8 449 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CLDND1Q9NY35 253 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 RBAKQ9NYW8 714 aaPredicted RBP17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 HSPBP1Q9NZL4 362 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SSX2IPQ9Y2D8 614 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 IRAK3Q9Y616 596 aa17.68■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 PER2O15055 1255 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 KIF20AO95235 890 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 SMC2O95347 1197 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 NFICP08651 508 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 LRPAP1P30533 357 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 ELAVL2Q12926 359 aaKnown RBP17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 CTC1Q2NKJ3 1217 aa17.67■□□□□ 0.42
MSH5-SAPCD1-206ENST00000491552 USP41Q3LFD5 358 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms