RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 CD300LGQ6UXG3 332 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 GRASPQ7Z6J2 395 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-211ENST00000491233 SIX5Q8N196 739 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 DDX27Q96GQ7 796 aaKnown RBP14.96□□□□□ -0.01
COL6A3-211ENST00000491233 SNX27Q96L92 541 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 UROC1Q96N76 676 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 NOTCH4Q99466 2003 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 PLIN2Q99541 437 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 TIPINQ9BVW5 301 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 C17orf75Q9HAS0 396 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 MTRRQ9UBK8 725 aa14.96□□□□□ -0.01
COL6A3-211ENST00000491233 RBM19Q9Y4C8 960 aaKnown RBP14.96□□□□□ -0.01
COL6A3-211ENST00000491233 ABLIM1O14639 778 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 CCL16O15467 120 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 HNRNPA1P09651 372 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL6A3-211ENST00000491233 MCF2P10911 925 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 LAMP2P13473 410 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 NPR3P17342 541 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 AOC1P19801 751 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 PROZP22891 400 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 FSHRP23945 695 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 OR1D2P34982 312 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 BRCC3P46736 316 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 NTHL1P78549 312 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 HTR4Q13639 388 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 RAB33AQ14088 237 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 XKR4Q5GH76 650 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 MPZL3Q6UWV2 235 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 SLC7A14Q8TBB6 771 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 CDK5RAP3Q96JB5 506 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 ZMAT2Q96NC0 199 aaKnown RBP14.95□□□□□ -0.02
COL6A3-211ENST00000491233 TCHPQ9BT92 498 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 UPF2Q9HAU5 1272 aaKnown RBP14.95□□□□□ -0.02
COL6A3-211ENST00000491233 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL6A3-211ENST00000491233 ANKFY1Q9P2R3 1169 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 CDY1Q9Y6F8 540 aa14.95□□□□□ -0.02
COL6A3-211ENST00000491233 TRAPPC3O43617 180 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SRFP11831 508 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 HOXA9P31269 272 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 STRN3Q13033 797 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 TMEM119Q4V9L6 283 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 ALKAL1Q6UXT8 129 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 RSPO2Q6UXX9 243 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SLC44A3Q8N4M1 653 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SYT2Q8N9I0 419 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-211ENST00000491233 ST13P5Q8NFI4 369 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SPIRE2Q8WWL2 714 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 NXPE3Q969Y0 559 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 ACAP3Q96P50 834 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SLC38A7Q9NVC3 462 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 CA14Q9ULX7 337 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 POLIQ9UNA4 740 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 SMC3Q9UQE7 1217 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 NUMBLQ9Y6R0 609 aa14.94□□□□□ -0.02
COL6A3-211ENST00000491233 CACNA1HO95180 2353 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 ANHXE9PGG2 379 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 PODXLO00592 558 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 MEFVO15553 781 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 PI15O43692 258 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 GFRA3O60609 400 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 XYLBO75191 536 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 PLA2G4BP0C869 781 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 PLS3P13797 630 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 KCNE1P15382 129 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 SLC12A3P55017 1021 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 CACNB1Q02641 598 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 NOLC1Q14978 699 aaKnown RBP eCLIP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 AXDND1Q5T1B0 1012 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 ARL6IP4Q66PJ3 421 aaKnown RBP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 ANKS3Q6ZW76 656 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 TMEM161BQ8NDZ6 487 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 ZBTB45Q96K62 511 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-211ENST00000491233 CNTN3Q9P232 1028 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 WNT16Q9UBV4 365 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 BACE2Q9Y5Z0 518 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 MIA3Q5JRA6 1907 aa14.93□□□□□ -0.02
COL6A3-211ENST00000491233 NPHP3-ACAD11A0A0J9YXS1 232 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 KRBA1A5PL33 1030 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 TOM1L1O75674 476 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 POU2F2P09086 479 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 MAPTP10636 758 aaKnown RBP14.92□□□□□ -0.02
COL6A3-211ENST00000491233 RFX1P22670 979 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 MCM2P49736 904 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 SMTNP53814 917 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 SEZ6Q53EL9 994 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 VARS2Q5ST30 1063 aaKnown RBP14.92□□□□□ -0.02
COL6A3-211ENST00000491233 CCDC105Q8IYK2 499 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 KCTD17Q8N5Z5 321 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 GPR152Q8TDT2 470 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 C18orf25Q96B23 403 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-211ENST00000491233 RTP3Q9BQQ7 232 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 NTPCRQ9BSD7 190 aaKnown RBP14.92□□□□□ -0.02
COL6A3-211ENST00000491233 HCFC1R1Q9NWW0 138 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 KCND2Q9NZV8 630 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 CDH7Q9ULB5 785 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 NUB1Q9Y5A7 615 aa14.92□□□□□ -0.02
COL6A3-211ENST00000491233 ZFP37Q9Y6Q3 630 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-211ENST00000491233 COL4A3Q01955 1670 aa14.91□□□□□ -0.02
COL6A3-211ENST00000491233 ROR1Q01973 937 aa14.91□□□□□ -0.02
COL6A3-211ENST00000491233 ZPBP2Q6X784 338 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms