RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 FBXL18Q96ME1 805 aa11.81□□□□□ -0.52
VPS13D-210ENST00000489961 UROC1Q96N76 676 aa11.81□□□□□ -0.52
VPS13D-210ENST00000489961 ZMAT2Q96NC0 199 aaKnown RBP11.81□□□□□ -0.52
VPS13D-210ENST00000489961 GAS2L1Q99501 681 aaPredicted RBP11.81□□□□□ -0.52
VPS13D-210ENST00000489961 COLEC11Q9BWP8 271 aa11.81□□□□□ -0.52
VPS13D-210ENST00000489961 PRDM12Q9H4Q4 367 aa11.81□□□□□ -0.52
VPS13D-210ENST00000489961 PUF60Q9UHX1 559 aaKnown RBP11.81□□□□□ -0.52
VPS13D-210ENST00000489961 UBQLN1Q9UMX0 589 aaKnown RBP11.81□□□□□ -0.52
VPS13D-210ENST00000489961 FRMD4BQ9Y2L6 1034 aa11.81□□□□□ -0.52
VPS13D-210ENST00000489961 PLXNA4Q9HCM2 1894 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 BICDL2A1A5D9 508 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 CASTOR2A6NHX0 329 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 NT5C1B-RDH14C9J2C7 533 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 B4GALT3O60512 393 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 FGF18O76093 207 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 BMP6P22004 513 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 NR2F2P24468 414 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 CCNE1P24864 410 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 PLCB3Q01970 1234 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 UBE3AQ05086 875 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 LRRC63Q05C16 580 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 SPAG1Q07617 926 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 TMEM132DQ14C87 1099 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 NAB2Q15742 525 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 ZCWPW2Q504Y3 356 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 CEP135Q66GS9 1140 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 JADE1Q6IE81 842 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 CENPPQ6IPU0 288 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 KLHL10Q6JEL2 608 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 NT5DC4Q86YG4 428 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 CBWD2Q8IUF1 395 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 MLKLQ8NB16 471 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 BEST2Q8NFU1 509 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 DDX27Q96GQ7 796 aaKnown RBP11.8□□□□□ -0.52
VPS13D-210ENST00000489961 LMAN2LQ9H0V9 348 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 DMAC2Q9NW81 257 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 STK39Q9UEW8 545 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 PRG3Q9Y2Y8 225 aaPredicted RBP11.8□□□□□ -0.52
VPS13D-210ENST00000489961 C2CD2Q9Y426 696 aa11.8□□□□□ -0.52
VPS13D-210ENST00000489961 EPOPA6NHQ4 379 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 PPP1R3GB7ZBB8 358 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 RFXAPO00287 272 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CETN3O15182 167 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 ITGB1P05556 798 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 NFICP08651 508 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CD44P16070 742 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CYP3A5P20815 502 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 RPL9P32969 192 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 NLRP12P59046 1061 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 FKBP3Q00688 224 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 SOX4Q06945 474 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 PAK1Q13153 545 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 ADAM9Q13443 819 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 ZBTB6Q15916 424 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 PTPROQ16827 1216 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 KLHL40Q2TBA0 621 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 ANKRD40Q6AI12 368 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CAVIN1Q6NZI2 390 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 SASS6Q6UVJ0 657 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 RBM43Q6ZSC3 357 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 SPPL3Q8TCT6 385 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CACTINQ8WUQ7 758 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 POF1BQ8WVV4 589 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 NELFBQ8WX92 580 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 C18orf25Q96B23 403 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 IGSF21Q96ID5 467 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 FNBP1Q96RU3 617 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 GOLGA2P5Q9HBQ8 144 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 PDE11AQ9HCR9 933 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 ALG13Q9NP73 1137 aaKnown RBP11.79□□□□□ -0.52
VPS13D-210ENST00000489961 MTMR10Q9NXD2 777 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 DACH1Q9UI36 760 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 CTNND2Q9UQB3 1225 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 LZTS1Q9Y250 596 aa11.79□□□□□ -0.52
VPS13D-210ENST00000489961 PODXLO00592 558 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 MAPK13O15264 365 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 GRM6O15303 877 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TADA2AO75478 443 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 B3GAT3O94766 335 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TMEM191BP0C7N4 346 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 PSMC2P35998 433 aaKnown RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 CLCNKBP51801 687 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TFAMQ00059 246 aaKnown RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 CYP24A1Q07973 514 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 BMS1Q14692 1282 aaKnown RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 PSMD6Q15008 389 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 UPP1Q16831 310 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 SKOR2Q2VWA4 1001 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 SPATA1Q5VX52 437 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 DCLRE1AQ6PJP8 1040 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 FOXR2Q6PJQ5 311 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 USP37Q86T82 979 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 TMEM173Q86WV6 379 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 RABGGTAQ92696 567 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 ANKRD36BP1Q96IX9 119 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 MFSD14AQ96MC6 490 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 CDX2Q99626 313 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-210ENST00000489961 PAAF1Q9BRP4 392 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 MARCH5Q9NX47 278 aa11.78□□□□□ -0.52
VPS13D-210ENST00000489961 DPP3Q9NY33 737 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms