RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 DERAQ9Y315 318 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 SSU72P8A0A1W2PR75 194 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 SOWAHDA6NJG2 315 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 GPR182O15218 404 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 LRRN2O75325 713 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 HLA-DRAP01903 254 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 HSPA1AP0DMV8 641 aaKnown RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 HSPA1BP0DMV9 641 aaKnown RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 CKBP12277 381 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 LBX1P52954 281 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 OSTNP61366 133 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 MAPK8IP2Q13387 824 aaPredicted RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 LPIN1Q14693 890 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 DUOXA2Q1HG44 320 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 TSR1Q2NL82 804 aaKnown RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 XKR4Q5GH76 650 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ZNF618Q5T7W0 954 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 SFMBT2Q5VUG0 894 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ALKAL1Q6UXT8 129 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 RAD9BQ6WBX8 426 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 TRAPPC11Q7Z392 1133 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ARHGEF19Q8IW93 802 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 CXorf38Q8TB03 319 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 HELQQ8TDG4 1101 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 NT5C1BQ96P26 610 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ACAP3Q96P50 834 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 SPAG5Q96R06 1193 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 MTMR12Q9C0I1 747 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 TRPV6Q9H1D0 765 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 AGO3Q9H9G7 860 aaKnown RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 SPTLC3Q9NUV7 552 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ZNHIT6Q9NWK9 470 aaKnown RBP12.4□□□□□ -0.42
C9orf3-220ENST00000489318 CNTN3Q9P232 1028 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ARHGAP20Q9P2F6 1191 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 DNAJC12Q9UKB3 198 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 ST3GAL5Q9UNP4 418 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 CENPFP49454 3210 aa12.4□□□□□ -0.42
C9orf3-220ENST00000489318 LACTBL1A8MY62 500 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 PITPNM1O00562 1244 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ASS1P00966 412 aaKnown RBP12.39□□□□□ -0.43
C9orf3-220ENST00000489318 NFICP08651 508 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 TMEM191BP0C7N4 346 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ANXA13P27216 316 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 SOX5P35711 763 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 PIK3CAP42336 1068 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 GJA8P48165 433 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 BIRC3Q13489 604 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 RAPGEF1Q13905 1077 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 DSC3Q14574 896 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ASTE1Q2TB18 679 aaPredicted RBP12.39□□□□□ -0.43
C9orf3-220ENST00000489318 GJB7Q6PEY0 223 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ENOSF1Q7L5Y1 443 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ANKRD33Q7Z3H0 272 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 CCDC170Q8IYT3 715 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 SMG8Q8ND04 991 aaKnown RBP12.39□□□□□ -0.43
C9orf3-220ENST00000489318 SHC3Q92529 594 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 JAKMIP2Q96AA8 810 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 FAXDC2Q96IV6 333 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 ANKRD36BP1Q96IX9 119 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 FAM84AQ96KN4 292 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 CHP1Q99653 195 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 NXF3Q9H4D5 531 aaKnown RBP12.39□□□□□ -0.43
C9orf3-220ENST00000489318 IPPQ9Y573 584 aa12.39□□□□□ -0.43
C9orf3-220ENST00000489318 RECQL4O94761 1208 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 LCA5LO95447 670 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 STAU1O95793 577 aaKnown RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 TNNC2P02585 160 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 SERPING1P05155 500 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 FERP16591 822 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 STAT1P42224 750 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 RAB27AP51159 221 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 YARSP54577 528 aaKnown RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 NOP14P78316 857 aaKnown RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 PAK2Q13177 524 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 NCOA4Q13772 614 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 MBTPS1Q14703 1052 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 MTF1Q14872 753 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 DRAP1Q14919 205 aaPredicted RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 TMEM132DQ14C87 1099 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 ZBTB6Q15916 424 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 JADE1Q6IE81 842 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 IRF2BP2Q7Z5L9 587 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 CCAR2Q8N163 923 aaKnown RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 C1orf127Q8N9H9 656 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 OLIG1Q8TAK6 271 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 TAF4BQ92750 862 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 KREMEN1Q96MU8 473 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 TOX2Q96NM4 488 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 SYT11Q9BT88 431 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 OSBPL7Q9BZF2 842 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 TRIM6Q9C030 488 aaPredicted RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 VRTNQ9H8Y1 702 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 C1orf112Q9NSG2 853 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 SNTG2Q9NY99 539 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 PADI3Q9ULW8 664 aa12.38□□□□□ -0.43
C9orf3-220ENST00000489318 BZW2Q9Y6E2 419 aaKnown RBP12.38□□□□□ -0.43
C9orf3-220ENST00000489318 ATP8B3O60423 1300 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 LTBP2Q14767 1821 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 TDRD15B5MCY1 1934 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 EIF3CLB5ME19 914 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms