RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 TMEM189-UBE2V1I3L0A0 370 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 WEE2P0C1S8 567 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 CXCL8P10145 99 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 RPL17P18621 184 aaKnown RBP23.11■■□□□ 1.29
LIME1-207ENST00000489212 TNFSF9P41273 254 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 FAM171A1Q5VUB5 890 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 DCLRE1AQ6PJP8 1040 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 PRSS55Q6UWB4 352 aaPredicted RBP23.11■■□□□ 1.29
LIME1-207ENST00000489212 GPR65Q8IYL9 337 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 STRA6Q9BX79 667 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 IKZF4Q9H2S9 585 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 TRIOO75962 3097 aa23.11■■□□□ 1.29
LIME1-207ENST00000489212 FRMD3A2A2Y4 597 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 LOC730098B7Z3J9 87 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 TISP43B9A030 160 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 ANKRD63C9JTQ0 380 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 PPP1R37O75864 691 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 B3GAT3O94766 335 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 ADH1AP07327 375 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 ITIH3Q06033 890 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 ATL3Q6DD88 541 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 TMEM130Q8N3G9 435 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 KCNG4Q8TDN1 519 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 STAMQ92783 540 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 CHAMP1Q96JM3 812 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 UROC1Q96N76 676 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 TTPALQ9BTX7 342 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 SLC38A7Q9NVC3 462 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 TBC1D7Q9P0N9 293 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 FNIP2Q9P278 1114 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 PCDHA7Q9UN72 937 aa23.1■■□□□ 1.29
LIME1-207ENST00000489212 A0A0B4J269 797 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 PI4K2BG5E9Z4 385 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 CLTAP09496 248 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 GAP43P17677 238 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 CES5AQ6NT32 575 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 TMC5Q6UXY8 1006 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 CEP57Q86XR8 500 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 GLYCTKQ8IVS8 523 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 LNX1Q8TBB1 728 aaPredicted RBP23.09■■□□□ 1.29
LIME1-207ENST00000489212 RPGRIP1Q96KN7 1286 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 FGFBP2Q9BYJ0 223 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.09■■□□□ 1.29
LIME1-207ENST00000489212 SEL1LQ9UBV2 794 aa23.09■■□□□ 1.29
LIME1-207ENST00000489212 TTC26A0AVF1 554 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 I3L4J1 428 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 PODXLO00592 558 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 OGTO15294 1046 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 GLUD1P00367 558 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 MYBP10242 640 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 IDEP14735 1019 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 ABCD1P33897 745 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 BRCC3P46736 316 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 SPAG1Q07617 926 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 KCNA1Q09470 495 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 ELAVL2Q12926 359 aaKnown RBP23.08■■□□□ 1.29
LIME1-207ENST00000489212 PALB2Q86YC2 1186 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 PIK3R5Q8WYR1 880 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 DHX58Q96C10 678 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 DDX27Q96GQ7 796 aaKnown RBP23.08■■□□□ 1.29
LIME1-207ENST00000489212 POMKQ9H5K3 350 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 SFXN1Q9H9B4 322 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 MRPL44Q9H9J2 332 aaKnown RBP23.08■■□□□ 1.29
LIME1-207ENST00000489212 MAN1C1Q9NR34 630 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 KBTBD4Q9NVX7 518 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 RCOR1Q9UKL0 485 aa23.08■■□□□ 1.29
LIME1-207ENST00000489212 SPATA31D3P0C874 917 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 FGFR3P22607 806 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 ME1P48163 572 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 CASP5P51878 434 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 ENOX2Q16206 610 aaKnown RBP23.07■■□□□ 1.28
LIME1-207ENST00000489212 HERC4Q5GLZ8 1057 aaPredicted RBP23.07■■□□□ 1.28
LIME1-207ENST00000489212 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.07■■□□□ 1.28
LIME1-207ENST00000489212 SPATA31D4Q6ZUB0 917 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 RNF135Q8IUD6 432 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 CLSTN3Q9BQT9 956 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 MSTO1Q9BUK6 570 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 TNMDQ9H2S6 317 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 PLEKHA5Q9HAU0 1116 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 OLFML3Q9NRN5 406 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 TUBGCP4Q9UGJ1 667 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 CFAP45Q9UL16 551 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 STYXL1Q9Y6J8 313 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 MTCL1Q9Y4B5 1905 aaKnown RBP23.07■■□□□ 1.28
LIME1-207ENST00000489212 C2orf16Q68DN1 1984 aa23.07■■□□□ 1.28
LIME1-207ENST00000489212 LACTBL1A8MY62 500 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 ADAM12O43184 909 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 TGM5O43548 720 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 SP100P23497 879 aaPredicted RBP23.06■■□□□ 1.28
LIME1-207ENST00000489212 MTHFRP42898 656 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 PSMD5Q16401 504 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 LILRA6Q6PI73 481 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 HVCN1Q96D96 273 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 NECTIN4Q96NY8 510 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 CUEDC2Q9H467 287 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 C11orf16Q9NQ32 467 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 PANK4Q9NVE7 773 aa23.06■■□□□ 1.28
LIME1-207ENST00000489212 CPSF3Q9UKF6 684 aaKnown RBP23.06■■□□□ 1.28
LIME1-207ENST00000489212 ADRB2P07550 413 aa23.05■■□□□ 1.28
LIME1-207ENST00000489212 TKTP29401 623 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms