RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 MAP3K4Q9Y6R4 1608 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 OTOL1A6NHN0 477 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 H0Y858 1186 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 HRKO00198 91 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 KPNA5O15131 536 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 PHF2O75151 1096 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ENDOD1O94919 500 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 MYF5P13349 255 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 PFKLP17858 780 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ECHS1P30084 290 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ZEB1P37275 1124 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 SLC6A9P48067 706 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 KCNQ1P51787 676 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 EPHB3P54753 998 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 CDC42EP1Q00587 391 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 MEF2AQ02078 507 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 TARDBPQ13148 414 aaKnown RBP eCLIP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 POLD3Q15054 466 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 TMEM200BQ69YZ2 307 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 Q6ZVL8 140 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 HEATR3Q7Z4Q2 680 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 APBB1IPQ7Z5R6 666 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 B3GNT8Q7Z7M8 397 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ZDHHC14Q8IZN3 488 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 KRT78Q8N1N4 520 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 AFAP1Q8N556 730 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 PIK3C3Q8NEB9 887 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 CXorf38Q8TB03 319 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 SNX33Q8WV41 574 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 POF1BQ8WVV4 589 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 HOXB13Q92826 284 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 SLC35A4Q96G79 324 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 TMX3Q96JJ7 454 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 DMRTA2Q96SC8 542 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 UHRF1Q96T88 793 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 LRRC27Q9C0I9 530 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 XYLT2Q9H1B5 865 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 LDAHQ9H6V9 325 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 MANSC1Q9H8J5 431 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 C14orf93Q9H972 538 aaKnown RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ATP6V0A4Q9HBG4 840 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 PCDH18Q9HCL0 1135 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 SIK3Q9Y2K2 1263 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 ADGRL1O94910 1474 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 NEO1Q92859 1461 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 IRS2Q9Y4H2 1338 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 MAST1Q9Y2H9 1570 aa4.91□□□□□ -1.62
PTCD3-216ENST00000487043 DHX57Q6P158 1386 aaKnown RBP4.91□□□□□ -1.62
PTCD3-216ENST00000487043 C9orf84Q5VXU9 1444 aa4.9□□□□□ -1.62
PTCD3-216ENST00000487043 TRAPPC8Q9Y2L5 1435 aa4.9□□□□□ -1.62
PTCD3-216ENST00000487043 CROCC2H7BZ55 1655 aa4.9□□□□□ -1.62
PTCD3-216ENST00000487043 A0A1W2PPL8 197 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 RASA4BC9J798 803 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 DAPK3O43293 454 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 RASA4O43374 803 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 SGTAO43765 313 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 EIF5BO60841 1220 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 NBNO60934 754 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 GAAP10253 952 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 CDR1P51861 262 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 NKX6-1P78426 367 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 SMAD4Q13485 552 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 PLS1Q14651 629 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 VMACQ2NL98 169 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 TRMT10BQ6PF06 316 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 GADL1Q6ZQY3 521 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 MYLK4Q86YV6 388 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 PQLC1Q8N2U9 271 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 ANKRD42Q8N9B4 389 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 DEPTORQ8TB45 409 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 FEZF2Q8TBJ5 459 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 PHKBQ93100 1093 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 NKD2Q969F2 451 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 DACT3Q96B18 629 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 MTFMTQ96DP5 389 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 APIPQ96GX9 242 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 NOX5Q96PH1 765 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 UIMC1Q96RL1 719 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 WRNIP1Q96S55 665 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 C11orf84Q9BUA3 381 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 CNTD2Q9H8S5 307 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 KIAA1586Q9HCI6 787 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 TLR9Q9NR96 1032 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 TRMT13Q9NUP7 481 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 PNPOQ9NVS9 261 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 ABCF2Q9UG63 623 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 CPA4Q9UI42 421 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 FBXO10Q9UK96 956 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 SPAG9O60271 1321 aaKnown RBP4.9□□□□□ -1.63
PTCD3-216ENST00000487043 CLSPNQ9HAW4 1339 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 CFAP74Q9C0B2 1584 aa4.9□□□□□ -1.63
PTCD3-216ENST00000487043 GCC2Q8IWJ2 1684 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 ADGBQ8N7X0 1667 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 KIF13AQ9H1H9 1805 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 NPHP1O15259 732 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 PHGDHO43175 533 aaKnown RBP4.89□□□□□ -1.63
PTCD3-216ENST00000487043 KNG1P01042 644 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 KITP10721 976 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 TYRP14679 529 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 TNFSF4P23510 183 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms