RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GOLGA2P5Q9HBQ8 144 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 HCFC1R1Q9NWW0 138 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 PCDHGA2Q9Y5H1 932 aa15.27■□□□□ 0.04
SQSTM1-208ENST00000485412 GPR179Q6PRD1 2367 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 MYH11P35749 1972 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 I3L4J1 428 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 N4BP3O15049 544 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 CYP11B2P19099 503 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 TRIM29Q14134 588 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 POTEHQ6S545 545 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 CCDC83Q8IWF9 413 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 ZBTB8OSQ8IWT0 167 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 CEP120Q8N960 986 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 C3orf58Q8NDZ4 430 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 NACC1Q96RE7 527 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 OSBPL6Q9BZF3 934 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 LTB4R2Q9NPC1 389 aa15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 MTF2Q9Y483 593 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-208ENST00000485412 ARHGEF35A5YM69 484 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 ACKR2O00590 384 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 THP07101 528 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 OR52Z1P0C646 297 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 CD72P21854 359 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 RPA1P27694 616 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 HOXA9P31269 272 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 SOX4Q06945 474 aaPredicted RBP15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 MAPK6Q16659 721 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 TMEM132AQ24JP5 1023 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 ZBTB41Q5SVQ8 909 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 TMEM130Q8N3G9 435 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 SLC7A14Q8TBB6 771 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 ZSCAN32Q9NX65 697 aa15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 CDV3Q9UKY7 258 aaKnown RBP15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 SMG5Q9UPR3 1016 aaKnown RBP15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 TPRP12270 2363 aaKnown RBP15.25■□□□□ 0.03
SQSTM1-208ENST00000485412 NCAM2O15394 837 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 TKTP29401 623 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 OR1D2P34982 312 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 NAMPTP43490 491 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 BRCC3P46736 316 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 CLCNKBP51801 687 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 PDXDC1Q6P996 788 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 TPRG1Q6ZUI0 275 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 C4orf32Q8N8J7 132 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 DEPTORQ8TB45 409 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 ING5Q8WYH8 240 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 PPP1R10Q96QC0 940 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 C2orf40Q9H1Z8 148 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 USP18Q9UMW8 372 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 SPTBN2O15020 2390 aa15.24■□□□□ 0.03
SQSTM1-208ENST00000485412 PP2D1A8MPX8 630 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 PRR5-ARHGAP8B1AHC4 643 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 NRG2O14511 850 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 MEFVO15553 781 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 KRT37O76014 449 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 FGFR3P22607 806 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 ATXN1P54253 815 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 ARHGAP8P85298 464 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 LMNB2Q03252 620 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 ELAVL2Q12926 359 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 PABPC1LQ4VXU2 614 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 TTC38Q5R3I4 469 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 AXDND1Q5T1B0 1012 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 NPAS3Q8IXF0 933 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 DAW1Q8N136 415 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 DDX27Q96GQ7 796 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 C8orf76Q96K31 380 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 NELL2Q99435 816 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 EPC1Q9H2F5 836 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 BHMT2Q9H2M3 363 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 DNMT3BQ9UBC3 853 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 COL4A2P08572 1712 aa15.23■□□□□ 0.03
SQSTM1-208ENST00000485412 B3GAT3O94766 335 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 POU2F2P09086 479 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 TARSP26639 723 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 CCT6AP40227 531 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 RAB33AQ14088 237 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 SLC5A9Q2M3M2 681 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 UVSSAQ2YD98 709 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ATF7IP2Q5U623 682 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 TSSK4Q6SA08 328 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ZNF852Q6ZMS4 543 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 TAS1R3Q7RTX0 852 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ZBTB44Q8NCP5 570 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ZMAT2Q96NC0 199 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ADPGKQ9BRR6 497 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 CDT1Q9H211 546 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 MTRRQ9UBK8 725 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 GMEB2Q9UKD1 530 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 KCNH3Q9ULD8 1083 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 MRPS17Q9Y2R5 130 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 MRPS23Q9Y3D9 190 aaKnown RBP15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 CDY1Q9Y6F8 540 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 ANK1P16157 1881 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 EPG5Q9HCE0 2579 aa15.22■□□□□ 0.03
SQSTM1-208ENST00000485412 TICRRQ7Z2Z1 1910 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 TMEM189-UBE2V1I3L0A0 370 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 TBC1D4O60343 1298 aa15.21■□□□□ 0.03
SQSTM1-208ENST00000485412 CDC25AP30304 524 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms