RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RAB24Q969Q5 203 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 CLPTM1LQ96KA5 538 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 RTFDC1Q9BY42 306 aaPredicted RBP7.77□□□□□ -1.17
USP40-213ENST00000483216 C11orf54Q9H0W9 315 aaPredicted RBP7.77□□□□□ -1.17
USP40-213ENST00000483216 ZNF180Q9UJW8 692 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 CHST2Q9Y4C5 530 aa7.77□□□□□ -1.17
USP40-213ENST00000483216 FAM20BO75063 409 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 RFPL1O75677 317 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 SCAF4O95104 1147 aaKnown RBP7.76□□□□□ -1.17
USP40-213ENST00000483216 CT47B1P0C2W7 299 aaPredicted RBP7.76□□□□□ -1.17
USP40-213ENST00000483216 CREMQ03060 361 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 TUBA3CQ13748 450 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 FAM102AQ5T9C2 384 aaPredicted RBP7.76□□□□□ -1.17
USP40-213ENST00000483216 TUBA3EQ6PEY2 450 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 DCBLD1Q8N8Z6 715 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 CPT1CQ8TCG5 803 aa7.76□□□□□ -1.17
USP40-213ENST00000483216 JPH3Q8WXH2 748 aaPredicted RBP7.76□□□□□ -1.17
USP40-213ENST00000483216 AHRRA9YTQ3 701 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 ALAS1P13196 640 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 CHN2P52757 468 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 PTTG1IPP53801 180 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 TLE1Q04724 770 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 LSM12Q3MHD2 195 aaKnown RBP7.75□□□□□ -1.17
USP40-213ENST00000483216 MED25Q71SY5 747 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 UBE3BQ7Z3V4 1068 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 GDF7Q7Z4P5 450 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 NLGN4YQ8NFZ3 816 aaPredicted RBP7.75□□□□□ -1.17
USP40-213ENST00000483216 FAM193BQ96PV7 902 aaPredicted RBP7.75□□□□□ -1.17
USP40-213ENST00000483216 SLC46A2Q9BY10 475 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 GTPBP4Q9BZE4 634 aaKnown RBP7.75□□□□□ -1.17
USP40-213ENST00000483216 FBXO34Q9NWN3 711 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 ZIM2Q9NZV7 527 aa7.75□□□□□ -1.17
USP40-213ENST00000483216 SLC16A6O15403 523 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 CYP2C19P33261 490 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 ZNF280AP59817 542 aaPredicted RBP7.74□□□□□ -1.17
USP40-213ENST00000483216 RNASE9P60153 205 aaKnown RBP7.74□□□□□ -1.17
USP40-213ENST00000483216 THEMIS2Q5TEJ8 643 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 AGAP9Q5VTM2 703 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 GADL1Q6ZQY3 521 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 CATIPQ7Z7H3 387 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 ZNF276Q8N554 614 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 IL17RDQ8NFM7 739 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 SLC25A43Q8WUT9 341 aaPredicted RBP7.74□□□□□ -1.17
USP40-213ENST00000483216 ZNF341Q9BYN7 854 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 MAN1C1Q9NR34 630 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 TRPM5Q9NZQ8 1165 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 POLHQ9Y253 713 aa7.74□□□□□ -1.17
USP40-213ENST00000483216 TCRBV7S2A1N4TA0A589 114 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 GAGE12BA1L429 117 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 GAGE12HA6NDE8 117 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 MTHFD1P11586 935 aaKnown RBP7.73□□□□□ -1.17
USP40-213ENST00000483216 TACR2P21452 398 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 FXR1P51114 621 aaKnown RBP eCLIP7.73□□□□□ -1.17
USP40-213ENST00000483216 NFE2Q16621 373 aaPredicted RBP7.73□□□□□ -1.17
USP40-213ENST00000483216 PABPC1LQ4VXU2 614 aaKnown RBP7.73□□□□□ -1.17
USP40-213ENST00000483216 ATAT1Q5SQI0 421 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 LCE5AQ5TCM9 118 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 RHOT2Q8IXI1 618 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 RAVER1Q8IY67 606 aaKnown RBP7.73□□□□□ -1.17
USP40-213ENST00000483216 HPS3Q969F9 1004 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 NEU1Q99519 415 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 KRTAP4-9Q9BYQ8 210 aa7.73□□□□□ -1.17
USP40-213ENST00000483216 REXO4Q9GZR2 422 aaKnown RBP7.73□□□□□ -1.17
USP40-213ENST00000483216 KIAA0391O15091 583 aaKnown RBP7.72□□□□□ -1.17
USP40-213ENST00000483216 ZNF185O15231 689 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 GRM6O15303 877 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 PPM1GO15355 546 aaPredicted RBP7.72□□□□□ -1.17
USP40-213ENST00000483216 SPATA31D3P0C874 917 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 GCSHP23434 173 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 PGS1Q32NB8 556 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 KHDC1Q4VXA5 237 aaKnown RBP7.72□□□□□ -1.17
USP40-213ENST00000483216 FNDC7Q5VTL7 733 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 SPATA31D4Q6ZUB0 917 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 ZFPM1Q8IX07 1006 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 FITM2Q8N6M3 262 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 C3orf20Q8ND61 904 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 JDP2Q8WYK2 163 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 MVB12AQ96EY5 273 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 PHACTR3Q96KR7 559 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 AIFM3Q96NN9 605 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 GSTO2Q9H4Y5 243 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 ZNF768Q9H5H4 540 aaKnown RBP7.72□□□□□ -1.17
USP40-213ENST00000483216 ATP11BQ9Y2G3 1177 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 USP15Q9Y4E8 981 aaPredicted RBP7.72□□□□□ -1.17
USP40-213ENST00000483216 EID1Q9Y6B2 187 aa7.72□□□□□ -1.17
USP40-213ENST00000483216 RNASET2O00584 256 aaKnown RBP7.71□□□□□ -1.18
USP40-213ENST00000483216 PPFIA4O75335 1185 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 OFD1O75665 1012 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 RPS6KA4O75676 772 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 ARIH2O95376 493 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 ITGB1P05556 798 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 C6P13671 934 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 MALP21145 153 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 NR4A1P22736 598 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 SLC6A2P23975 617 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 PTGS2P35354 604 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 PDCD4Q53EL6 469 aaKnown RBP7.71□□□□□ -1.18
USP40-213ENST00000483216 LENG9Q96B70 501 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 VRK1Q99986 396 aaPredicted RBP7.71□□□□□ -1.18
USP40-213ENST00000483216 SLC12A5Q9H2X9 1139 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms