RNA–Protein interactions for RNA: ENST00000476594.1

CCM2-208, Transcript of CCM2 scaffold protein, human

TSL 3

Gene CCM2, Length 533 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-208	ENST00000476594	PPP1R10	Q96QC0	940 aa	Known RBP	11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	VN1R3	Q9BXE9	311 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	S1PR5	Q9H228	398 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	ST6GALNAC4	Q9H4F1	302 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	MAGEF1	Q9HAY2	307 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	FAM13B	Q9NYF5	915 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	CNTN3	Q9P232	1028 aa		11.15	□□□□□ -0.62
CCM2-208	ENST00000476594	ARHGEF37	A1IGU5	675 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	LOC730098	B7Z3J9	87 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	OGT	O15294	1046 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	LILRB3	O75022	631 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	IDE	P14735	1019 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	PAX3	P23760	479 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	ME1	P48163	572 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	RBM10	P98175	930 aa	Known RBP	11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	GTF2B	Q00403	316 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	PSMD5	Q16401	504 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	XKR4	Q5GH76	650 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	ANKS3	Q6ZW76	656 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	CCDC65	Q8IXS2	484 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	PLCD3	Q8N3E9	789 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	CEP120	Q8N960	986 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	IQUB	Q8NA54	791 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	CMAS	Q8NFW8	434 aa	Predicted RBP	11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	HASPIN	Q8TF76	798 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	PIK3R5	Q8WYR1	880 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	MSTO1	Q9BUK6	570 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	APOL5	Q9BWW9	433 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	GPR62	Q9BZJ7	368 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	TNMD	Q9H2S6	317 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	MRPL44	Q9H9J2	332 aa	Known RBP	11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	RPF1	Q9H9Y2	349 aa	Known RBP	11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	MAN1C1	Q9NR34	630 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	TSHZ2	Q9NRE2	1034 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	ZDHHC7	Q9NXF8	308 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	UBQLN1	Q9UMX0	589 aa	Known RBP	11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	UST	Q9Y2C2	406 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594	PCDHB13	Q9Y5F0	798 aa		11.14	□□□□□ -0.63
CCM2-208	ENST00000476594		H7C4K7	107 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	PODXL	O00592	558 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	SYN3	O14994	580 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	GPR37L1	O60883	481 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	EFEMP2	O95967	443 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	CLCNKB	P51801	687 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	POU5F1	Q01860	360 aa	Known RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	NAB2	Q15742	525 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	UPP1	Q16831	310 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	ALKAL1	Q6UXT8	129 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	TMC5	Q6UXY8	1006 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	USP49	Q70CQ1	688 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	RTL10	Q7L3V2	364 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	OTOP3	Q7RTS5	596 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	GPR149	Q86SP6	731 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	RNF135	Q8IUD6	432 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	PDILT	Q8N807	584 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	TDRD5	Q8NAT2	981 aa	Known RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	APPL2	Q8NEU8	664 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	ZBTB45	Q96K62	511 aa	Predicted RBP	11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	ACCS	Q96QU6	501 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	RHOBTB2	Q9BYZ6	727 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	PIDD1	Q9HB75	910 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	OLFML3	Q9NRN5	406 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	CIT	O14578	2027 aa		11.13	□□□□□ -0.63
CCM2-208	ENST00000476594	ABLIM1	O14639	778 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	GCNT3	O95395	438 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	LDHA	P00338	332 aa	Known RBP	11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	CXCL8	P10145	99 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	CYP3A5	P20815	502 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	NMT1	P30419	496 aa	Known RBP	11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	MCM4	P33991	863 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	RTP2	Q5QGT7	225 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	ADAL	Q6DHV7	355 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	TAS1R1	Q7RTX1	841 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	ZNF720	Q7Z2F6	126 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	SFR1	Q86XK3	245 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	SYCP3	Q8IZU3	236 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	SPRYD3	Q8NCJ5	442 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	KREMEN2	Q8NCW0	462 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	BEST2	Q8NFU1	509 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	RABGGTA	Q92696	567 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	KIF12	Q96FN5	646 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	PAAF1	Q9BRP4	392 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	ASB7	Q9H672	318 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	TMEM206	Q9H813	350 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	CD320	Q9NPF0	282 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	PANK4	Q9NVE7	773 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	TFIP11	Q9UBB9	837 aa	Known RBP	11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	HCN4	Q9Y3Q4	1203 aa		11.12	□□□□□ -0.63
CCM2-208	ENST00000476594	MYH15	Q9Y2K3	1946 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594		A0A0B4J269	797 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594	CCDC195	A0A1B0GUA6	201 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594	MYMK	A6NI61	221 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594	PRR33	A8MZF0	331 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594		F8W810	466 aa		11.11	□□□□□ -0.63
CCM2-208	ENST00000476594	KIAA0391	O15091	583 aa	Known RBP	11.11	□□□□□ -0.63
CCM2-208	ENST00000476594	TGM5	O43548	720 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms