RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF70Q9UC06 446 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 NOX1Q9Y5S8 564 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 MXRA7P84157 204 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 SRSF4Q08170 494 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 PPP3CAQ08209 521 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 SP140Q13342 867 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 NFE2L2Q16236 605 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 GEN1Q17RS7 908 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 SPDYE7PQ495Y7 208 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 ZNF425Q6IV72 752 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 RASSF3Q86WH2 238 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 DRC7Q8IY82 874 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 FAM43AQ8N2R8 423 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 SYNPOQ8N3V7 929 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 RNPC3Q96LT9 517 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 MYOCQ99972 504 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 RNPEPQ9H4A4 650 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 BCO1Q9HAY6 547 aa4.92□□□□□ -1.62
CCDC88A-212ENST00000474059 FPR1P21462 350 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 ALDH1A3P47895 512 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 MAPK7Q13164 816 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 DHX37Q8IY37 1157 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 ZNF366Q8N895 744 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 SSH3Q8TE77 659 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 UROC1Q96N76 676 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 SLC29A3Q9BZD2 475 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 KMT5AQ9NQR1 393 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 VSX1Q9NZR4 365 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 LRIT1Q9P2V4 623 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 DPP7Q9UHL4 492 aa4.91□□□□□ -1.62
CCDC88A-212ENST00000474059 SCNN1BP51168 640 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 KRTAP10-7P60409 375 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 IL2P60568 153 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 OCRLQ01968 901 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 SLFN5Q08AF3 891 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 UBXN2BQ14CS0 331 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 TCEA2Q15560 299 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 FSCN1Q16658 493 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 RRP12Q5JTH9 1297 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 GPR156Q8NFN8 814 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 DDB2Q92466 427 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 PTCD3Q96EY7 689 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 TIMP4Q99727 224 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 KRTAP2-2Q9BYT5 123 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 PIF1Q9H611 641 aa4.9□□□□□ -1.63
CCDC88A-212ENST00000474059 WDR91A4D1P6 747 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 AKR1B10O60218 316 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 PHF2O75151 1096 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 GPANK1O95872 356 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 CELA2AP08217 269 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 ITPKBP27987 946 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 PCSK1P29120 753 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 ADRM1Q16186 407 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 OTUD7BQ6GQQ9 843 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 NPM2Q86SE8 214 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 NIM1KQ8IY84 436 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 OR2W6PQ8NHA6 318 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 STON2Q8WXE9 905 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 SARAFQ96BY9 339 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 LDAHQ9H6V9 325 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 DMRT3Q9NQL9 472 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 ENTPD2Q9Y5L3 495 aa4.89□□□□□ -1.63
CCDC88A-212ENST00000474059 GSG1L2A8MUP6 293 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 BPIP17213 487 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 WT1P19544 449 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 SLC6A9P48067 706 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 NOMO3P69849 1222 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 CCT2P78371 535 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 CDK17Q00537 523 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 NOMO1Q15155 1222 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 UGT8Q16880 541 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 NOMO2Q5JPE7 1267 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 THNSL2Q86YJ6 484 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 CMIPQ8IY22 773 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 PPM1KQ8N3J5 372 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 CLRN3Q8NCR9 226 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 MARS2Q96GW9 593 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 MRFAP1L1Q96HT8 127 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 PAWRQ96IZ0 340 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 NOC2LQ9Y3T9 749 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 AOX1Q06278 1338 aa4.88□□□□□ -1.63
CCDC88A-212ENST00000474059 MANSC4A6NHS7 340 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 POMCP01189 267 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 RAP2AP10114 183 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 ENPP1P22413 925 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 MAPK10P53779 464 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 SSBP2P81877 361 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 SEPT2Q15019 361 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 SF3B3Q15393 1217 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 ZNF529Q6P280 563 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 SEM1Q6ZVN7 128 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 KCNK18Q7Z418 384 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 ZSWIM4Q9H7M6 989 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 ADAM21Q9UKJ8 722 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 ACTL7AQ9Y615 435 aa4.87□□□□□ -1.63
CCDC88A-212ENST00000474059 A0A087X0B3 334 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 ERN1O75460 977 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 ATP5JP18859 108 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms