RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TRIM6Q9C030 488 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 SENP6Q9GZR1 1112 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 CDHR5Q9HBB8 845 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 UBE2TQ9NPD8 197 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 PAK6Q9NQU5 681 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 STARD7Q9NQZ5 370 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 CHST12Q9NRB3 414 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TOPORSQ9NS56 1045 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 DERAQ9Y315 318 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 ADGRG1Q9Y653 693 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TNRC18O15417 2968 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-205ENST00000473099 TANC1Q9C0D5 1861 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 GRIN2DO15399 1336 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 MROH7Q68CQ1 1323 aa13.84□□□□□ -0.19
VPS13D-205ENST00000473099 SCN1AP35498 2009 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 A0A1W2PQ45 241 aaPredicted RBP13.83□□□□□ -0.2
VPS13D-205ENST00000473099 A0A1W2PQY0 241 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 AKR1B10O60218 316 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 RPS6KA5O75582 802 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 OFD1O75665 1012 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 LCA5LO95447 670 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 TBXAS1P24557 533 aaPredicted RBP13.83□□□□□ -0.2
VPS13D-205ENST00000473099 YARSP54577 528 aaKnown RBP13.83□□□□□ -0.2
VPS13D-205ENST00000473099 SEZ6Q53EL9 994 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 FAM26DQ5JW98 314 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 PHLDB3Q6NSJ2 640 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 ZNF662Q6ZS27 426 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 HACE1Q8IYU2 909 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 PPM1KQ8N3J5 372 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 USP38Q8NB14 1042 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 SH3TC2Q8TF17 1288 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 PPP1R13LQ8WUF5 828 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 TAF4BQ92750 862 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 FAM212AQ96EL1 285 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 PPP1R13BQ96KQ4 1090 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 ARHGAP20Q9P2F6 1191 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 PIN4Q9Y237 131 aaKnown RBP13.83□□□□□ -0.2
VPS13D-205ENST00000473099 C2CD2Q9Y426 696 aa13.83□□□□□ -0.2
VPS13D-205ENST00000473099 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.83□□□□□ -0.2
VPS13D-205ENST00000473099 TULP1O00294 542 aaPredicted RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 GPR182O15218 404 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 NPTXRO95502 500 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 CXCL8P10145 99 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 EIF4A3P38919 411 aaKnown RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 RGS19P49795 217 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 KIF11P52732 1056 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 APBA1Q02410 837 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 MGAT3Q09327 533 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 TRPC3Q13507 836 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 NCOA4Q13772 614 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 MTF1Q14872 753 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 PTPN14Q15678 1187 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 PKN2Q16513 984 aaKnown RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 SGSM1Q2NKQ1 1148 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 C10orf76Q5T2E6 689 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 HGSNATQ68CP4 663 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 TOGARAM2Q6ZUX3 1019 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 TRAPPC11Q7Z392 1133 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 IRF2BP2Q7Z5L9 587 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 CDR2LQ86X02 465 aaPredicted RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 CEP120Q8N960 986 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 TMEM40Q8WWA1 233 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 DHX38Q92620 1227 aaKnown RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 SEMA4DQ92854 862 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 RRAGDQ9NQL2 400 aaPredicted RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 TRMT1Q9NXH9 659 aaKnown RBP13.82□□□□□ -0.2
VPS13D-205ENST00000473099 ATP8B3O60423 1300 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 PTPRJQ12913 1337 aa13.82□□□□□ -0.2
VPS13D-205ENST00000473099 LACTBL1A8MY62 500 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 ARVCFO00192 962 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 XPOTO43592 962 aaKnown RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 EVI5O60447 810 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 CAPN2P17655 700 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 FGFR4P22455 802 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 THPOP40225 353 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 WNT7BP56706 349 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 OSTNP61366 133 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 TFAMQ00059 246 aaKnown RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 BMS1Q14692 1282 aaKnown RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 TMEM132DQ14C87 1099 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 ARHGAP44Q17R89 818 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 SLC10A6Q3KNW5 377 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 LMBRD2Q68DH5 695 aaPredicted RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 GJB7Q6PEY0 223 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 FAM228AQ86W67 206 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 ARHGEF19Q8IW93 802 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 REXO1L1PQ8IX06 675 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 C17orf53Q8N3J3 647 aaPredicted RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 OR5B17Q8NGF7 314 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 HELQQ8TDG4 1101 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 SHC3Q92529 594 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 TSGA10Q9BZW7 698 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 MTMR12Q9C0I1 747 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 UNC93B1Q9H1C4 597 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 FAM124BQ9H5Z6 455 aaPredicted RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 OGDHLQ9ULD0 1010 aa13.81□□□□□ -0.2
VPS13D-205ENST00000473099 R3HCC1Q9Y3T6 440 aaKnown RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 NOC2LQ9Y3T9 749 aaKnown RBP13.81□□□□□ -0.2
VPS13D-205ENST00000473099 RBAK-RBAKDNI3L0D1 243 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 KRT86O43790 486 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms