RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 MCF2P10911 925 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 MAPK7Q13164 816 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 HTR4Q13639 388 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 RAB33AQ14088 237 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 AXDND1Q5T1B0 1012 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-210ENST00000472880 ANKS3Q6ZW76 656 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 C1orf186Q6ZWK4 172 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 TAS1R3Q7RTX0 852 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 KCNK18Q7Z418 384 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 TCHPQ9BT92 498 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 PTPRHQ9HD43 1115 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 CA14Q9ULX7 337 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 CDY1Q9Y6F8 540 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 NUMBLQ9Y6R0 609 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 CACNA1HO95180 2353 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 ANHXE9PGG2 379 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 H3BQV1 296 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 SLC16A4O15374 487 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 PI15O43692 258 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 HARSP12081 509 aaKnown RBP21.65■■□□□ 1.06
COL9A3-210ENST00000472880 GUCY2CP25092 1073 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 TKTP29401 623 aaKnown RBP21.65■■□□□ 1.06
COL9A3-210ENST00000472880 NTHL1P78549 312 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 ATP2C1P98194 919 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-210ENST00000472880 STRN3Q13033 797 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 MPZL3Q6UWV2 235 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 CCDC105Q8IYK2 499 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 C3orf58Q8NDZ4 430 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 DDX27Q96GQ7 796 aaKnown RBP21.65■■□□□ 1.06
COL9A3-210ENST00000472880 CDK5RAP3Q96JB5 506 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 SNX27Q96L92 541 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 ACAP3Q96P50 834 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 CDH7Q9ULB5 785 aa21.65■■□□□ 1.06
COL9A3-210ENST00000472880 KRBA1A5PL33 1030 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 PROB1E7EW31 1015 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 I3L4J1 428 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 POU2F2P09086 479 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 PROZP22891 400 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 NBL1P41271 181 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 BRCC3P46736 316 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 SOX4Q06945 474 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-210ENST00000472880 RAD51AP2Q09MP3 1159 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 UVSSAQ2YD98 709 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 XKR4Q5GH76 650 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 GPR152Q8TDT2 470 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 ANKFY1Q9P2R3 1169 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 BACE2Q9Y5Z0 518 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 TRIP11Q15643 1979 aa21.64■■□□□ 1.05
COL9A3-210ENST00000472880 VWA3AA6NCI4 1184 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 SFI1A8K8P3 1242 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 PODXLO00592 558 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 IGFBP6P24592 240 aaPredicted RBP21.63■■□□□ 1.05
COL9A3-210ENST00000472880 GJB2P29033 226 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 SMTNP53814 917 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 HYIQ5T013 277 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 CD300LGQ6UXG3 332 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 ALKAL1Q6UXT8 129 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 RTL10Q7L3V2 364 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 KCTD17Q8N5Z5 321 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 DTWD2Q8NBA8 298 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 SPIRE2Q8WWL2 714 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 TMX3Q96JJ7 454 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 TBC1D17Q9HA65 648 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 KCNG1Q9UIX4 513 aa21.63■■□□□ 1.05
COL9A3-210ENST00000472880 PLS3P13797 630 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 KCNE1P15382 129 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 NOLC1Q14978 699 aaKnown RBP eCLIP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 RSPO2Q6UXX9 243 aaPredicted RBP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 MTSS1LQ765P7 747 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 SYT2Q8N9I0 419 aaPredicted RBP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 ST13P5Q8NFI4 369 aaPredicted RBP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 FGF13Q92913 245 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 ZMAT2Q96NC0 199 aaKnown RBP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 PNMA5Q96PV4 448 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 PLIN2Q99541 437 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 UPF2Q9HAU5 1272 aaKnown RBP21.62■■□□□ 1.05
COL9A3-210ENST00000472880 ARHGEF3Q9NR81 526 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 SLC2A4RGQ9NR83 387 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 KCND2Q9NZV8 630 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 CNTN3Q9P232 1028 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 NUB1Q9Y5A7 615 aa21.62■■□□□ 1.05
COL9A3-210ENST00000472880 ABLIM1O14639 778 aa21.61■■□□□ 1.05
COL9A3-210ENST00000472880 TOM1L1O75674 476 aa21.61■■□□□ 1.05
COL9A3-210ENST00000472880 ANGPT1Q15389 498 aa21.61■■□□□ 1.05
COL9A3-210ENST00000472880 PABPC1LQ4VXU2 614 aaKnown RBP21.61■■□□□ 1.05
COL9A3-210ENST00000472880 FGF14Q92915 247 aa21.61■■□□□ 1.05
COL9A3-210ENST00000472880 NTPCRQ9BSD7 190 aaKnown RBP21.61■■□□□ 1.05
COL9A3-210ENST00000472880 CITO14578 2027 aa21.61■■□□□ 1.05
COL9A3-210ENST00000472880 MYH11P35749 1972 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 SYN3O14994 580 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 PLA2G4BP0C869 781 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 RPL9P32969 192 aaKnown RBP21.6■■□□□ 1.05
COL9A3-210ENST00000472880 ROR1Q01973 937 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 VARS2Q5ST30 1063 aaKnown RBP21.6■■□□□ 1.05
COL9A3-210ENST00000472880 ARL6IP4Q66PJ3 421 aaKnown RBP21.6■■□□□ 1.05
COL9A3-210ENST00000472880 PARM1Q6UWI2 310 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 FRMD5Q7Z6J6 570 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 TMEM161BQ8NDZ6 487 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 ITFG1Q8TB96 612 aa21.6■■□□□ 1.05
COL9A3-210ENST00000472880 ZBTB45Q96K62 511 aaPredicted RBP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms