RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 FRMD4BQ9Y2L6 1034 aa11.46□□□□□ -0.57
SMC1A-206ENST00000470241 PTPRJQ12913 1337 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 SLC16A3O15427 465 aaKnown RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 DNAJB2P25686 324 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 MCCD1P59942 119 aaPredicted RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 RNASELQ05823 741 aaKnown RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 ANO6Q4KMQ2 910 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 FILIP1Q7Z7B0 1213 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 ENOX1Q8TC92 643 aaKnown RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 PARD3BQ8TEW8 1205 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 TIFAQ96CG3 184 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 KIF12Q96FN5 646 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 TSPAN18Q96SJ8 248 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 POP1Q99575 1024 aaKnown RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 SRRTQ9BXP5 876 aaKnown RBP11.45□□□□□ -0.58
SMC1A-206ENST00000470241 CACNG4Q9UBN1 327 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 DNAJB4Q9UDY4 337 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 DERAQ9Y315 318 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 C2CD2Q9Y426 696 aa11.45□□□□□ -0.58
SMC1A-206ENST00000470241 CASTOR2A6NHX0 329 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 ZC3H11AO75152 810 aaKnown RBP eCLIP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 GALTP07902 379 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 DLATP10515 647 aaKnown RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 EPB41P11171 864 aaKnown RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 LAG3P18627 525 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 CYP3A5P20815 502 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 IGFBP6P24592 240 aaPredicted RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 PBX3P40426 434 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 SLC11A1P49279 550 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 GUCY2FP51841 1108 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 BCAR1P56945 870 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 DLG4P78352 724 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 CLDN10P78369 228 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 TUSC3Q13454 348 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 TMEM132DQ14C87 1099 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 SURF1Q15526 300 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 C1orf220Q5T0J3 134 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 SPATA1Q5VX52 437 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 LMBRD2Q68DH5 695 aaPredicted RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 INTS8Q75QN2 995 aaKnown RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 NT5DC4Q86YG4 428 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 IRF2BP1Q8IU81 584 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 WDR49Q8IV35 697 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 COLGALT1Q8NBJ5 622 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 OR5B17Q8NGF7 314 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 TMC2Q8TDI7 906 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 FAM193BQ96PV7 902 aaPredicted RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 CGRRF1Q99675 332 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 PAAF1Q9BRP4 392 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 TMEM175Q9BSA9 504 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 C17orf80Q9BSJ5 609 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 GOLGA2P5Q9HBQ8 144 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 SLC38A7Q9NVC3 462 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 INTS13Q9NVM9 706 aa11.44□□□□□ -0.58
SMC1A-206ENST00000470241 UBQLN1Q9UMX0 589 aaKnown RBP11.44□□□□□ -0.58
SMC1A-206ENST00000470241 LRRIQ3A6PVS8 624 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 F8W810 466 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 TULP1O00294 542 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 NRP1O14786 923 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 FGFR1OPO95684 399 aaKnown RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 LRPAP1P30533 357 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 BMPR1AP36894 532 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 VAMP7P51809 220 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 ERVK-21P61565 698 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 TFAMQ00059 246 aaKnown RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 ENPEPQ07075 957 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 BFSP1Q12934 665 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 NCAPHQ15003 741 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 HABP4Q5JVS0 413 aaKnown RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 SPOUT1Q5T280 376 aaKnown RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 PPP2R2DQ66LE6 453 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 SCARA3Q6AZY7 606 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 KCNT2Q6UVM3 1135 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 FRMD5Q7Z6J6 570 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 TMEM173Q86WV6 379 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 SLC39A11Q8N1S5 342 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 BCL7CQ8WUZ0 217 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 ZNF516Q92618 1163 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 RABGGTAQ92696 567 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 LRCH3Q96II8 777 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 ZNF558Q96NG5 402 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 TGS1Q96RS0 853 aaKnown RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 FNBP1Q96RU3 617 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 BPIFA3Q9BQP9 254 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 MTMR12Q9C0I1 747 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 SLC28A3Q9HAS3 691 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 MARCH5Q9NX47 278 aa11.43□□□□□ -0.58
SMC1A-206ENST00000470241 ARMCX3Q9UH62 379 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 PRG3Q9Y2Y8 225 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-206ENST00000470241 NT5C1B-RDH14C9J2C7 533 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 PPEF2O14830 753 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 XPOTO43592 962 aaKnown RBP11.42□□□□□ -0.58
SMC1A-206ENST00000470241 GNA14O95837 355 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 C4BPAP04003 597 aaKnown RBP11.42□□□□□ -0.58
SMC1A-206ENST00000470241 ALDH2P05091 517 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 TRIM49P0CI25 452 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 TRIM49CP0CI26 452 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 KRT13P13646 458 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 TNNI1P19237 187 aa11.42□□□□□ -0.58
SMC1A-206ENST00000470241 RPL9P32969 192 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms