RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 HOXD12P35452 270 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 FLT3P36888 993 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 HSD17B3P37058 310 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 EIF1AXP47813 144 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PREPP48147 710 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PTDSS1P48651 473 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 FXR1P51114 621 aaKnown RBP eCLIP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SCNN1BP51168 640 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PMS2P54278 862 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 DRG2P55039 364 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 ADARP55265 1226 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TUBA1BP68363 451 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 HPCAP84074 193 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 GUCY2DQ02846 1103 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SLC34A1Q06495 639 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 EHHADHQ08426 723 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 AP1B1Q10567 949 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 NMIQ13287 307 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PNOCQ13519 176 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 RASGRF1Q13972 1273 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PTPAQ15257 358 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 INF2Q27J81 1249 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CNPY1Q3B7I2 92 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 KRT71Q3SY84 523 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CCDC14Q49A88 953 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TCP11X2Q5H9J9 407 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 C6orf163Q5TEZ5 329 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 MFSD4BQ5TF39 518 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 EFCAB2Q5VUJ9 269 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PCNX4Q63HM2 1172 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 PDE12Q6L8Q7 609 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 BORAQ6PGQ7 559 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 C16orf87Q6PH81 154 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SHC4Q6S5L8 630 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 B3GNT6Q6ZMB0 384 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TUBA1AQ71U36 451 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 INTS8Q75QN2 995 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 MARK2Q7KZI7 788 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 NLRP9Q7RTR0 991 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CCDC84Q86UT8 332 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SPATA24Q86W54 205 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 VPS37DQ86XT2 251 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CACTIN-AS1Q8N1I8 211 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 ALLCQ8N6M5 410 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TBC1D16Q8TBP0 767 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 ZNF398Q8TD17 642 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 HELQQ8TDG4 1101 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 DDI1Q8WTU0 396 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CTNNBL1Q8WYA6 563 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SEC14L1Q92503 715 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TAF4BQ92750 862 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 FERMT2Q96AC1 680 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 CAPZA3Q96KX2 299 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 NUDCD1Q96RS6 583 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SETDB2Q96T68 719 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 FAM167BQ9BTA0 163 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 MTA3Q9BTC8 594 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SPZ1Q9BXG8 430 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 RTFDC1Q9BY42 306 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TRIM55Q9BYV6 548 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 USP44Q9H0E7 712 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SH2D4AQ9H788 454 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TLE6Q9H808 572 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 FAIMQ9NVQ4 179 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 LNPEPQ9UIQ6 1025 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 DSEQ9UL01 958 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 NFU1Q9UMS0 254 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 POLIQ9UNA4 740 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 TBC1D30Q9Y2I9 924 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.19□□□□□ -1.58
SF3B1-207ENST00000468925 STK36Q9NRP7 1315 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 ARHGAP23Q9P227 1491 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 MROH1Q8NDA8 1641 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 AKAP12Q02952 1782 aa5.19□□□□□ -1.58
SF3B1-207ENST00000468925 AGLP35573 1532 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 CRB1P82279 1406 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 EDC4Q6P2E9 1401 aaKnown RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 KANSL1LA0AUZ9 987 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 BICDL2A1A5D9 508 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 PDE2AO00408 941 aaPredicted RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 TM4SF5O14894 197 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 EREGO14944 169 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 RGS16O15492 202 aaPredicted RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 AP1G1O43747 822 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 CSDE1O75534 798 aaKnown RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 MTRF1O75570 445 aaKnown RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 UBOX5O94941 541 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 CTDNEP1O95476 244 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 ASMTLO95671 621 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 ESRRBO95718 433 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 GAS8O95995 478 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 ATP5BP06576 529 aaKnown RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 KRT16P08779 473 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 BMP3P12645 472 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 PCSK2P16519 638 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 ZNF12P17014 697 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 HSPA6P17066 643 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 NPR3P17342 541 aa5.18□□□□□ -1.58
SF3B1-207ENST00000468925 TAL1P17542 331 aaPredicted RBP5.18□□□□□ -1.58
SF3B1-207ENST00000468925 PTPN2P17706 415 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms