RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 UBR7Q8N806 425 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 CAVIN3Q969G5 261 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 PCDHB18PQ96TA0 734 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 THAP2Q9H0W7 228 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 ABHD16BQ9H3Z7 469 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 SLITRK6Q9H5Y7 841 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 EFCC1Q9HA90 598 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 GDF3Q9NR23 364 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 PRMT7Q9NVM4 692 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-208ENST00000468792 SLC5A4Q9NY91 659 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 TNFSF13BQ9Y275 285 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 IVNS1ABPQ9Y6Y0 642 aa8.18□□□□□ -1.1
COL6A3-208ENST00000468792 KCNK3O14649 394 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 DDX3YO15523 660 aaKnown RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 IL18RAPO95256 599 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 VNN1O95497 513 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SNAI1O95863 264 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 ASS1P00966 412 aaKnown RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CYP1A1P04798 512 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 LGALS2P05162 132 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CLTAP09496 248 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CYP2C8P10632 490 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 TMOD1P28289 359 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CXCR5P32302 372 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 PHKA2P46019 1235 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 ACOT2P49753 483 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 ZNF132P52740 706 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 TNFAIP2Q03169 654 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CENPCQ03188 943 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 DRP2Q13474 957 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CUL2Q13617 745 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CASP8Q14790 479 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CLEC16AQ2KHT3 1053 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SGSM1Q2NKQ1 1148 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 GLIPR1L2Q4G1C9 344 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 C8orf74Q6P047 294 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CHRDL2Q6WN34 429 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 EEPD1Q7L9B9 569 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 PLEKHH3Q7Z736 793 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SLC47A2Q86VL8 602 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 PALB2Q86YC2 1186 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 NT5DC4Q86YG4 428 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 IFT20Q8IY31 132 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 EFCAB13Q8IY85 973 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 METTL13Q8N6R0 699 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 UBL4BQ8N7F7 174 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 RNF149Q8NC42 400 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 AENQ8WTP8 325 aaKnown RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SLC20A1Q8WUM9 679 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SEC14L1Q92503 715 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 KAT5Q92993 513 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 TATDN2Q93075 761 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 ZBTB45Q96K62 511 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 LRRC1Q9BTT6 524 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 WNT8AQ9H1J5 351 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 VRTNQ9H8Y1 702 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 PDE11AQ9HCR9 933 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 MED4Q9NPJ6 270 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 TOPORSQ9NS56 1045 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 RBM12Q9NTZ6 932 aaKnown RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-208ENST00000468792 TAS2R14Q9NYV8 317 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 ALG6Q9Y672 507 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 PLXNA1Q9UIW2 1896 aa8.17□□□□□ -1.1
COL6A3-208ENST00000468792 CCDC66A2RUB6 948 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 RRN3P2A6NIE6 340 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 PLXNB2O15031 1838 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 SORBS3O60504 671 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 SEC31AO94979 1220 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 LSM8O95777 96 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 STAU1O95793 577 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 EDN1P05305 212 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MMEP08473 750 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 POTEJP0CG39 1038 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MCF2P10911 925 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 CTNNA2P26232 953 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 PIK3CAP42336 1068 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 SLC1A1P43005 524 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 EPHB4P54760 987 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 YWHAEP62258 255 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MBTD1Q05BQ5 628 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 C2orf54Q08AI8 447 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 PTP4A2Q12974 167 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 CUL1Q13616 776 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 NCOA4Q13772 614 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 SMC1AQ14683 1233 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 ATF7IP2Q5U623 682 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MAP1SQ66K74 1059 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 EFCAB12Q6NXP0 572 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MAATS1Q7Z4T9 603 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 GPR142Q7Z601 462 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 ZNF410Q86VK4 478 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 PHF13Q86YI8 300 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 GPIHBP1Q8IV16 184 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 CD302Q8IX05 232 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MREGQ8N565 214 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 CD101Q93033 1021 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 ARHGEF26Q96DR7 871 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MS4A14Q96JA4 679 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms