RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ISY1Q9ULR0 285 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 HS3ST4Q9Y661 456 aa5.74□□□□□ -1.49
CCDC88A-210ENST00000468534 A0A1W2PRQ8 180 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 FAM83GA6ND36 823 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 PRSS47A8MTI9 375 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 PRR5-ARHGAP8B1AHC4 643 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 NRP2O60462 931 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 HMMRO75330 724 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 NCR1O76036 304 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 SEC24DO94855 1032 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 IGHDP01880 384 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 LMNAP02545 664 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 RPN1P04843 607 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 CLEC2LP0C7M8 214 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 POU3F3P20264 500 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 WNT3AP56704 352 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 NRG3P56975 720 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 PSMC1P62191 440 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 FAM83BQ5T0W9 1011 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 KSR2Q6VAB6 950 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 TAS1R1Q7RTX1 841 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 SMAP1Q8IYB5 467 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 MYO1HQ8N1T3 1032 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 TTC8Q8TAM2 541 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 ANP32BQ92688 251 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 SERINC2Q96SA4 455 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 FEZ1Q99689 392 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 PDCD2LQ9BRP1 358 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 FAM126AQ9BYI3 521 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 ANO3Q9BYT9 981 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 ODF2LQ9ULJ1 636 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 GTF2A1LQ9UNN4 478 aa5.73□□□□□ -1.49
CCDC88A-210ENST00000468534 LEFTY2O00292 366 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 PRAMEF4O60810 478 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 ADRA1BP35368 520 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 RNASE9P60153 205 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 IL2P60568 153 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 MCL1Q07820 350 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 UBE3CQ15386 1083 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 SLC4A8Q2Y0W8 1093 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 HYIQ5T013 277 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 C16orf86Q6ZW13 317 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 GDF7Q7Z4P5 450 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 SYNPOQ8N3V7 929 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 CHCHD4Q8N4Q1 142 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 LILRA3Q8N6C8 439 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 SMC1BQ8NDV3 1235 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 PPHLN1Q8NEY8 458 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 SLC46A2Q9BY10 475 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 CXorf56Q9H5V9 222 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 LUZP4Q9P127 313 aa5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 EVLQ9UI08 416 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-210ENST00000468534 ZMYM3Q14202 1370 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 PCSK5Q92824 1860 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 A0A1W2PR48 441 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 TCEA3O75764 348 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 NDUFA10O95299 355 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 LSP1P33241 339 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 SCNN1BP51168 640 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 GPSM2P81274 684 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 APBA1Q02410 837 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 WASHC5Q12768 1159 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 TOMM20Q15388 145 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 SEPT7Q16181 437 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 CCDC62Q6P9F0 684 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 DOK3Q7L591 496 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 GLB1L2Q8IW92 636 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 HSCBQ8IWL3 235 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 LMNTD2Q8IXW0 634 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 NDUFAF2Q8N183 169 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 ZNF610Q8N9Z0 462 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 NINJ1Q92982 152 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 CCDC47Q96A33 483 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 MYEOVQ96EZ4 313 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 TARS2Q9BW92 718 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 TEX101Q9BY14 249 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 WDR11Q9BZH6 1224 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 AKIP1Q9NQ31 210 aa5.71□□□□□ -1.5
CCDC88A-210ENST00000468534 PABPN1LA6NDY0 278 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 ALG1L2C9J202 215 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 RNASET2O00584 256 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 ORC4O43929 436 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 KDM1AO60341 852 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 POU3F2P20265 443 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 GPR15P49685 360 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 OCRLQ01968 901 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 NHLH2Q02577 135 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 TAF11Q15544 211 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 TERF2Q15554 542 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 HSP90AB3PQ58FF7 597 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 FAM133BQ5BKY9 247 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 METTL24Q5JXM2 366 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 GPR158Q5T848 1215 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 ANKS6Q68DC2 871 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 IQSEC1Q6DN90 963 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 SKAP1Q86WV1 359 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 NBPF5PQ86XG9 351 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 NIM1KQ8IY84 436 aa5.7□□□□□ -1.5
CCDC88A-210ENST00000468534 CMTR2Q8IYT2 770 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms