RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	ANKRD54	Q6NXT1	300 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	SLC27A1	Q6PCB7	646 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	MYCT1	Q8N699	235 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	KIAA0895	Q8NCT3	520 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	ANKRD20A12P	Q8NF67	263 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	GOLGA5	Q8TBA6	731 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	ZNF507	Q8TCN5	953 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	SPIRE2	Q8WWL2	714 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	NELFB	Q8WX92	580 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	BSND	Q8WZ55	320 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	IFT74	Q96LB3	600 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	GBP3	Q9H0R5	595 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	C2orf40	Q9H1Z8	148 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	S1PR5	Q9H228	398 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	MRPL44	Q9H9J2	332 aa	Known RBP	13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	SLC39A2	Q9NP94	309 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	STK39	Q9UEW8	545 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	GDA	Q9Y2T3	454 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	GIT1	Q9Y2X7	761 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	USP15	Q9Y4E8	981 aa	Predicted RBP	13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	HES2	Q9Y543	173 aa		13.16	□□□□□ -0.3
CTNS-205	ENST00000467663	ARL5C	A6NH57	179 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	GPR37L1	O60883	481 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	TPM3	P06753	285 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	CTSA	P10619	480 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	HOXB8	P17481	243 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	MAPK7	Q13164	816 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	DMP1	Q13316	513 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	MYBPC2	Q14324	1141 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	EDRF1	Q3B7T1	1238 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	ZNF720	Q7Z2F6	126 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	SFR1	Q86XK3	245 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	ZBTB8OS	Q8IWT0	167 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	COLGALT2	Q8IYK4	626 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	HACE1	Q8IYU2	909 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	SUSD6	Q92537	303 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	FAM193B	Q96PV7	902 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	GAD1	Q99259	594 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	VN1R3	Q9BXE9	311 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	TRIM6	Q9C030	488 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	CCDC113	Q9H0I3	377 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	ZHX3	Q9H4I2	956 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	THAP9	Q9H5L6	903 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	TMEM206	Q9H813	350 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	FAN1	Q9Y2M0	1017 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	NFE2L3	Q9Y4A8	694 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	ZMYM2	Q9UBW7	1377 aa		13.15	□□□□□ -0.3
CTNS-205	ENST00000467663	ACKR2	O00590	384 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	PDXK	O00764	312 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	NRP1	O14786	923 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CBFA2T2	O43439	604 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CALU	O43852	315 aa	Predicted RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CLASP2	O75122	1294 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	NPTXR	O95502	500 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	ALAD	P13716	330 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CD44	P16070	742 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	RPL13	P26373	211 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	MLH1	P40692	756 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	FKBP3	Q00688	224 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	DSC1	Q08554	894 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	NFIL3	Q16649	462 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	MAPK6	Q16659	721 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	KNOP1	Q1ED39	458 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	KLHL10	Q6JEL2	608 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	LLGL2	Q6P1M3	1020 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	SYCE2	Q6PIF2	218 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CDR2L	Q86X02	465 aa	Predicted RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	GSTCD	Q8NEC7	633 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	TMEM174	Q8WUU8	243 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CASP10	Q92851	521 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	ZFP42	Q96MM3	310 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	NXF3	Q9H4D5	531 aa	Known RBP	13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	C11orf16	Q9NQ32	467 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	MIOS	Q9NXC5	875 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	EXOC7	Q9UPT5	735 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	CTNND2	Q9UQB3	1225 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	TRAF3IP3	Q9Y228	551 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	HCFC2	Q9Y5Z7	792 aa		13.14	□□□□□ -0.31
CTNS-205	ENST00000467663	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	TTLL13P	A6NNM8	815 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	LOC730098	B7Z3J9	87 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	N4BP3	O15049	544 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	GCNT3	O95395	438 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	GNA14	O95837	355 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	EFEMP2	O95967	443 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	ZNF18	P17022	549 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	COL9A1	P20849	921 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	AKAP5	P24588	427 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	EEF1G	P26641	437 aa	Known RBP	13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	SCNN1G	P51170	649 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	EFNA5	P52803	228 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	NCKAP1L	P55160	1127 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	GTF2B	Q00403	316 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	CCDC173	Q0VFZ6	552 aa		13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	PRPF4B	Q13523	1007 aa	Known RBP	13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	CBX2	Q14781	532 aa	Predicted RBP	13.13	□□□□□ -0.31
CTNS-205	ENST00000467663	PTPN14	Q15678	1187 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms