RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 FNBP1Q96RU3 617 aa16.47■□□□□ 0.23
NPHP4-205ENST00000466897 CGRRF1Q99675 332 aa16.47■□□□□ 0.23
NPHP4-205ENST00000466897 TBC1D13Q9NVG8 400 aa16.47■□□□□ 0.23
NPHP4-205ENST00000466897 ARMCX3Q9UH62 379 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-205ENST00000466897 UBQLN1Q9UMX0 589 aaKnown RBP16.47■□□□□ 0.23
NPHP4-205ENST00000466897 COLQQ9Y215 455 aaPredicted RBP16.47■□□□□ 0.23
NPHP4-205ENST00000466897 PCDHA11Q9Y5I1 949 aa16.47■□□□□ 0.23
NPHP4-205ENST00000466897 RANBP2P49792 3224 aaKnown RBP16.47■□□□□ 0.23
NPHP4-205ENST00000466897 TBKBP1A7MCY6 615 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 TLL1O43897 1013 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 PRKCSHP14314 528 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-205ENST00000466897 IBSPP21815 317 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-205ENST00000466897 SCNN1GP51170 649 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 VAMP7P51809 220 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 AFF1P51825 1210 aaKnown RBP16.46■□□□□ 0.23
NPHP4-205ENST00000466897 WNT7BP56706 349 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 TMEM132DQ14C87 1099 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 JADE1Q6IE81 842 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 TMCO2Q7Z6W1 182 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-205ENST00000466897 EFCAB13Q8IY85 973 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 AOPEPQ8N6M6 819 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 KIF12Q96FN5 646 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 EEF2KMTQ96G04 330 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 ZBED2Q9BTP6 218 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 CXCL16Q9H2A7 254 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 PDE11AQ9HCR9 933 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 MIOSQ9NXC5 875 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 INPP5FQ9Y2H2 1132 aa16.46■□□□□ 0.23
NPHP4-205ENST00000466897 STX10O60499 249 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 NFICP08651 508 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 ZNF18P17022 549 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 EEF1GP26641 437 aaKnown RBP16.45■□□□□ 0.22
NPHP4-205ENST00000466897 GTF2H1P32780 548 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 GATMP50440 423 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 SPAG1Q07617 926 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 TUSC3Q13454 348 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 BTG3Q14201 252 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CCDC40Q4G0X9 1142 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 FAM117BQ6P1L5 589 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 TRIM59Q8IWR1 403 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 PLEKHO2Q8TD55 490 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CACTINQ8WUQ7 758 aaKnown RBP16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CLP1Q92989 425 aaKnown RBP16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CCDC127Q96BQ5 260 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 FAM212AQ96EL1 285 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CNOT6LQ96LI5 555 aaKnown RBP16.45■□□□□ 0.22
NPHP4-205ENST00000466897 UROC1Q96N76 676 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 TMEM175Q9BSA9 504 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 HSD3B7Q9H2F3 369 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 CBX8Q9HC52 389 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 INTS13Q9NVM9 706 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 PLAGL2Q9UPG8 496 aa16.45■□□□□ 0.22
NPHP4-205ENST00000466897 LAMA2P24043 3122 aaKnown RBP16.44■□□□□ 0.22
NPHP4-205ENST00000466897 LRRIQ3A6PVS8 624 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-205ENST00000466897 BECN2A8MW95 431 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 POMCP01189 267 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 LRPAP1P30533 357 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 SMAD3P84022 425 aaKnown RBP16.44■□□□□ 0.22
NPHP4-205ENST00000466897 RAB30Q15771 203 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 DUOXA2Q1HG44 320 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 LRIT3Q3SXY7 679 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 GLRA4Q5JXX5 417 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 C1orf220Q5T0J3 134 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 COLGALT2Q8IYK4 626 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 BEST2Q8NFU1 509 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 SLC35C1Q96A29 364 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 CWH43Q9H720 699 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 SAMSN1Q9NSI8 373 aaKnown RBP16.44■□□□□ 0.22
NPHP4-205ENST00000466897 FANCLQ9NW38 375 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 MAGEC2Q9UBF1 373 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-205ENST00000466897 PTPRJQ12913 1337 aa16.44■□□□□ 0.22
NPHP4-205ENST00000466897 SCN1AP35498 2009 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 KCNJ18B7U540 433 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 PMM2O15305 246 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 LINC00271P0C7V0 271 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 DLATP10515 647 aaKnown RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 LAG3P18627 525 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 TNNI1P19237 187 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 RPL9P32969 192 aaKnown RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 RNASELQ05823 741 aaKnown RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 KCNJ12Q14500 433 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 TCP11X2Q5H9J9 407 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 FAM109BQ6ICB4 259 aaPredicted RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 C15orf39Q6ZRI6 1047 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 FIBCD1Q8N539 461 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 DDX27Q96GQ7 796 aaKnown RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 ANKRD36BP1Q96IX9 119 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 FAM193BQ96PV7 902 aaPredicted RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 NRDE2Q9H7Z3 1164 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 ITGA11Q9UKX5 1188 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 RWDD3Q9Y3V2 267 aa16.43■□□□□ 0.22
NPHP4-205ENST00000466897 MRPL42Q9Y6G3 142 aaKnown RBP16.43■□□□□ 0.22
NPHP4-205ENST00000466897 PLXNA4Q9HCM2 1894 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TMEM189-UBE2V1I3L0A0 370 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 DDHD2O94830 711 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TNNC2P02585 160 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TMEM191BP0C7N4 346 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 PAX3P23760 479 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TPM4P67936 248 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 DLG4P78352 724 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms