RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CDY1Q9Y6F8 540 aa19.18■□□□□ 0.66
COL7A1-206ENST00000466591 C2orf16Q68DN1 1984 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 SMIM28A0A1B0GU29 152 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 VPS37CA5D8V6 355 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-206ENST00000466591 H0Y858 1186 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 I3L4J1 428 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 CLDN3O15551 220 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 ARPP19P56211 112 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 NOLC1Q14978 699 aaKnown RBP eCLIP19.17■□□□□ 0.66
COL7A1-206ENST00000466591 AXDND1Q5T1B0 1012 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-206ENST00000466591 KCNK18Q7Z418 384 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 SYT2Q8N9I0 419 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-206ENST00000466591 RSAD2Q8WXG1 361 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 NXPE3Q969Y0 559 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 ZNF707Q96C28 371 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-206ENST00000466591 MYADMQ96S97 322 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 CLSTN3Q9BQT9 956 aa19.17■□□□□ 0.66
COL7A1-206ENST00000466591 TMEM189-UBE2V1I3L0A0 370 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 PODXLO00592 558 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 PRRG1O14668 218 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 GALR2O43603 387 aaPredicted RBP19.16■□□□□ 0.66
COL7A1-206ENST00000466591 TOM1L1O75674 476 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 FAM13AO94988 1023 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 TKTP29401 623 aaKnown RBP19.16■□□□□ 0.66
COL7A1-206ENST00000466591 UPP1Q16831 310 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 LILRA6Q6PI73 481 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 DAW1Q8N136 415 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 SPIRE2Q8WWL2 714 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 SNX27Q96L92 541 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 MMTAG2Q9BU76 263 aaKnown RBP19.16■□□□□ 0.66
COL7A1-206ENST00000466591 EPS15L1Q9UBC2 864 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 CA14Q9ULX7 337 aa19.16■□□□□ 0.66
COL7A1-206ENST00000466591 ZFP37Q9Y6Q3 630 aaPredicted RBP19.16■□□□□ 0.66
COL7A1-206ENST00000466591 H7C4K7 107 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 TBCAO75347 108 aaKnown RBP19.15■□□□□ 0.66
COL7A1-206ENST00000466591 LRG1P02750 347 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 LAMP2P13473 410 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 FGFR3P22607 806 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 MARCKSP29966 332 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-206ENST00000466591 MCM4P33991 863 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 BRCC3P46736 316 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 LIG4P49917 911 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 CLCN5P51795 746 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 CACNB1Q02641 598 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-206ENST00000466591 TCF15Q12870 199 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 NAB2Q15742 525 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 BRAPQ7Z569 592 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 GPBP1Q86WP2 473 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 TMEM105Q8N8V8 129 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 KMT2EQ8IZD2 1858 aa19.15■□□□□ 0.66
COL7A1-206ENST00000466591 ZNF318Q5VUA4 2279 aa19.14■□□□□ 0.66
COL7A1-206ENST00000466591 MYO10Q9HD67 2058 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 K7ENM7 598 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 TULP1O00294 542 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-206ENST00000466591 NARSO43776 548 aaKnown RBP19.14■□□□□ 0.65
COL7A1-206ENST00000466591 N4BP1O75113 896 aaKnown RBP19.14■□□□□ 0.65
COL7A1-206ENST00000466591 CD2BP2O95400 341 aaKnown RBP19.14■□□□□ 0.65
COL7A1-206ENST00000466591 RPL9P32969 192 aaKnown RBP19.14■□□□□ 0.65
COL7A1-206ENST00000466591 MAPK7Q13164 816 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 RAB33AQ14088 237 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 HYIQ5T013 277 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 ZPBP2Q6X784 338 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 MYCT1Q8N699 235 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 PNMA5Q96PV4 448 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 RTP3Q9BQQ7 232 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 MTRRQ9UBK8 725 aa19.14■□□□□ 0.65
COL7A1-206ENST00000466591 NPHP3-ACAD11A0A0J9YXS1 232 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 HNRNPDLO14979 420 aaKnown RBP19.13■□□□□ 0.65
COL7A1-206ENST00000466591 ADAM12O43184 909 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SLC26A4O43511 780 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SRFP11831 508 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 PDCP20941 246 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 HOXA9P31269 272 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SLC12A3P55017 1021 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 PPP2R3AQ06190 1150 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 UVSSAQ2YD98 709 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 PABPC1LQ4VXU2 614 aaKnown RBP19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SEZ6Q53EL9 994 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 MTSS1LQ765P7 747 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 TAS1R3Q7RTX0 852 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 ELMOD1Q8N336 334 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SLC44A3Q8N4M1 653 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 ZBTB45Q96K62 511 aaPredicted RBP19.13■□□□□ 0.65
COL7A1-206ENST00000466591 PTPRHQ9HD43 1115 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 WNT16Q9UBV4 365 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 CDH7Q9ULB5 785 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 ODF2LQ9ULJ1 636 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 BACE2Q9Y5Z0 518 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 NUMBLQ9Y6R0 609 aa19.13■□□□□ 0.65
COL7A1-206ENST00000466591 SYN3O14994 580 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 XPOTO43592 962 aaKnown RBP19.12■□□□□ 0.65
COL7A1-206ENST00000466591 MAPTP10636 758 aaKnown RBP19.12■□□□□ 0.65
COL7A1-206ENST00000466591 KCNE1P15382 129 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 TXLNAP40222 546 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 NTHL1P78549 312 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 KYAT1Q16773 422 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 TMEM119Q4V9L6 283 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 VARS2Q5ST30 1063 aaKnown RBP19.12■□□□□ 0.65
COL7A1-206ENST00000466591 ZNF280DQ6N043 979 aa19.12■□□□□ 0.65
COL7A1-206ENST00000466591 TMEM161BQ8NDZ6 487 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms