RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RNF168Q8IYW5 571 aaPredicted RBP14.23□□□□□ -0.13
COL28A1-206ENST00000465339 STAMQ92783 540 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 SNX27Q96L92 541 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 ACCSQ96QU6 501 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 TSPAN18Q96SJ8 248 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 C7orf25Q9BPX7 421 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 HERC2P3Q9BVR0 1158 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 COL25A1Q9BXS0 654 aaPredicted RBP14.23□□□□□ -0.13
COL28A1-206ENST00000465339 TRIM9Q9C026 710 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 HAPLN2Q9GZV7 340 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 USP25Q9UHP3 1055 aa14.23□□□□□ -0.13
COL28A1-206ENST00000465339 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 GRXCR2A6NFK2 248 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CASTOR2A6NHX0 329 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 OGTO15294 1046 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 LILRB3O75022 631 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 TBX10O75333 385 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 GCNT3O95395 438 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 URODP06132 367 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 DLX2Q07687 328 aaPredicted RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 COASYQ13057 564 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 KCNC3Q14003 757 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 POSTNQ15063 836 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 PTPN14Q15678 1187 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 SLC10A6Q3KNW5 377 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 USP41Q3LFD5 358 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 GLRA4Q5JXX5 417 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 L1TD1Q5T7N2 865 aaKnown RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 PTCRAQ6ISU1 281 aaPredicted RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 KIAA1841Q6NSI8 718 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 FUT10Q6P4F1 479 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 STXBP4Q6ZWJ1 553 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 PPFIBP1Q86W92 1011 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CEP57L1Q8IYX8 460 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 ADAMTS19Q8TE59 1207 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 DDX27Q96GQ7 796 aaKnown RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 MSLNLQ96KJ4 702 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 MSTO1Q9BUK6 570 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 EMILIN2Q9BXX0 1053 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CHST7Q9NS84 486 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 TBC1D7Q9P0N9 293 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CLEC1BQ9P126 229 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CNTN3Q9P232 1028 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 CD207Q9UJ71 328 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.22□□□□□ -0.13
COL28A1-206ENST00000465339 STYXL1Q9Y6J8 313 aa14.22□□□□□ -0.13
COL28A1-206ENST00000465339 SF3B1O75533 1304 aaKnown RBP eCLIP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 ANKRD63C9JTQ0 380 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 F8W810 466 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 TMEM189-UBE2V1I3L0A0 370 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 CLASP2O75122 1294 aaKnown RBP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 GLP2RO95838 553 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 SLFN14P0C7P3 912 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 RPL9P32969 192 aaKnown RBP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 GLUD2P49448 558 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 POU5F1Q01860 360 aaKnown RBP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 DSG1Q02413 1049 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 ELAVL2Q12926 359 aaKnown RBP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 SEZ6Q53EL9 994 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 KIAA0319Q5VV43 1072 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 SLC39A4Q6P5W5 647 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 TMEM92Q6UXU6 159 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 TAS1R1Q7RTX1 841 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 CD302Q8IX05 232 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 AUTS2Q8WXX7 1259 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 CASP10Q92851 521 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 PAAF1Q9BRP4 392 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 GPR62Q9BZJ7 368 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 TMEM206Q9H813 350 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 RPF1Q9H9Y2 349 aaKnown RBP14.21□□□□□ -0.13
COL28A1-206ENST00000465339 TTC28Q96AY4 2481 aa14.21□□□□□ -0.13
COL28A1-206ENST00000465339 BDP1A6H8Y1 2624 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 FAM237AA0A1B0GTK4 181 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 A0A1B0GVL5 298 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 PVALEFA0A1B0GWK0 134 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 A0A1W2PQ27 194 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 A0A1W2PQ64 194 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 A0A1W2PQD8 194 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 TTC26A0AVF1 554 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 TRAPPC3O43617 180 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 FAM189A1O60320 539 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 KIF4AO95239 1232 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 ADRB2P07550 413 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 PFKFB1P16118 471 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 HOXB8P17481 243 aaPredicted RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 CLCNKBP51801 687 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 ASIC1P78348 528 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 PPP2R3AQ06190 1150 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 SMAD4Q13485 552 aaKnown RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 UPP1Q16831 310 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 ANKRD54Q6NXT1 300 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 UNC13DQ70J99 1090 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 SYCP3Q8IZU3 236 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 VN1R2Q8NFZ6 395 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 RABGGTAQ92696 567 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 CHAMP1Q96JM3 812 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 ZMAT2Q96NC0 199 aaKnown RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 KLHL5Q96PQ7 755 aa14.2□□□□□ -0.14
COL28A1-206ENST00000465339 UHRF1Q96T88 793 aaPredicted RBP14.2□□□□□ -0.14
COL28A1-206ENST00000465339 RXFP1Q9HBX9 757 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms