RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CDY1Q9Y6F8 540 aa17.69■□□□□ 0.42
COL7A1-204ENST00000462475 ZFP37Q9Y6Q3 630 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-204ENST00000462475 FAM186AA6NE01 2351 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 GVINP1Q7Z2Y8 2422 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 WDR87Q6ZQQ6 2873 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 SMIM28A0A1B0GU29 152 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 CCDC169A6NNP5 214 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 HIP1RO75146 1068 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 XYLBO75191 536 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 DCNP07585 359 aaKnown RBP17.68■□□□□ 0.42
COL7A1-204ENST00000462475 U2AF2P26368 475 aaKnown RBP eCLIP17.68■□□□□ 0.42
COL7A1-204ENST00000462475 GRM5P41594 1212 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 BRCC3P46736 316 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 PDIA5Q14554 519 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 SPECC1Q5M775 1068 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 ERICH6BQ5W0A0 696 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 PHLDB3Q6NSJ2 640 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 UROC1Q96N76 676 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 ACO2Q99798 780 aaKnown RBP17.68■□□□□ 0.42
COL7A1-204ENST00000462475 PTPRHQ9HD43 1115 aa17.68■□□□□ 0.42
COL7A1-204ENST00000462475 POU2F2P09086 479 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 CDC25AP30304 524 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 OSTNP61366 133 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 GPC5P78333 572 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 MAPK7Q13164 816 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 DMP1Q13316 513 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 IL17AQ16552 155 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 XKR4Q5GH76 650 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 KCNK18Q7Z418 384 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 APBB1IPQ7Z5R6 666 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 ZMAT2Q96NC0 199 aaKnown RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 CCDC94Q9BW85 323 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 TARS2Q9BW92 718 aaKnown RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 MRPL4Q9BYD3 311 aaKnown RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 RAB34Q9BZG1 259 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 FOXQ1Q9C009 403 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 TOPORSQ9NS56 1045 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 DLGAP2Q9P1A6 1054 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 ARHGAP28Q9P2N2 729 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 DNMT3BQ9UBC3 853 aaKnown RBP17.67■□□□□ 0.42
COL7A1-204ENST00000462475 BACE2Q9Y5Z0 518 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 DOCK6Q96HP0 2047 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 SPTBN4Q9H254 2564 aa17.67■□□□□ 0.42
COL7A1-204ENST00000462475 ABLIM1O14639 778 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 YARSP54577 528 aaKnown RBP17.66■□□□□ 0.42
COL7A1-204ENST00000462475 PABPC1LQ4VXU2 614 aaKnown RBP17.66■□□□□ 0.42
COL7A1-204ENST00000462475 ALKAL1Q6UXT8 129 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 ANKS3Q6ZW76 656 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 NPAS3Q8IXF0 933 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 ADSSL1Q8N142 457 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 ING5Q8WYH8 240 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 SNX27Q96L92 541 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 MMTAG2Q9BU76 263 aaKnown RBP17.66■□□□□ 0.42
COL7A1-204ENST00000462475 TMEM134Q9H6X4 195 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 KMT5AQ9NQR1 393 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 DNM3Q9UQ16 869 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 SIT1Q9Y3P8 196 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 STK24Q9Y6E0 443 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 COL4A3Q01955 1670 aa17.66■□□□□ 0.42
COL7A1-204ENST00000462475 PODXLO00592 558 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 MEFVO15553 781 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-204ENST00000462475 TRAPPC3O43617 180 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 LRRN2O75325 713 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 HARSP12081 509 aaKnown RBP17.65■□□□□ 0.42
COL7A1-204ENST00000462475 GLULP15104 373 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 PROZP22891 400 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 ROR1Q01973 937 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 UVSSAQ2YD98 709 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 KRT79Q5XKE5 535 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 RINT1Q6NUQ1 792 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 MTSS1LQ765P7 747 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 PJA1Q8NG27 643 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 DRC1Q96MC2 740 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 KXD1Q9BQD3 176 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 DAXXQ9UER7 740 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-204ENST00000462475 R4GN57 208 aa17.65■□□□□ 0.42
COL7A1-204ENST00000462475 DCHS1Q96JQ0 3298 aa17.64■□□□□ 0.42
COL7A1-204ENST00000462475 SLC16A4O15374 487 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 MCF2P10911 925 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 STARD6P59095 220 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 SNW1Q13573 536 aaKnown RBP17.64■□□□□ 0.41
COL7A1-204ENST00000462475 SLC5A9Q2M3M2 681 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 VARS2Q5ST30 1063 aaKnown RBP17.64■□□□□ 0.41
COL7A1-204ENST00000462475 C1orf186Q6ZWK4 172 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 C18orf25Q96B23 403 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-204ENST00000462475 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.64■□□□□ 0.41
COL7A1-204ENST00000462475 SLC38A7Q9NVC3 462 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 KCNH3Q9ULD8 1083 aa17.64■□□□□ 0.41
COL7A1-204ENST00000462475 WDR27A2RRH5 827 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 SFI1A8K8P3 1242 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 LAD1O00515 517 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 KCNE1P15382 129 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 PRPHP41219 470 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 RAD51AP2Q09MP3 1159 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 ZRSR1Q15695 479 aaKnown RBP17.63■□□□□ 0.41
COL7A1-204ENST00000462475 SLC8B1Q6J4K2 584 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 POTEHQ6S545 545 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 MPZL3Q6UWV2 235 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 DTHD1Q6ZMT9 781 aa17.63■□□□□ 0.41
COL7A1-204ENST00000462475 ZBTB45Q96K62 511 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms