RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 DUSP6Q16828 381 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 SLC10A6Q3KNW5 377 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 GLRA4Q5JXX5 417 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 PLPP4Q5VZY2 271 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 FUT10Q6P4F1 479 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.91□□□□□ -0.34
VPS52-213ENST00000461743 ELOA2Q8IYF1 753 aaPredicted RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 GRAMD1CQ8IYS0 662 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 EFHBQ8N7U6 833 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 ZNF507Q8TCN5 953 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 ATXN2LQ8WWM7 1075 aaKnown RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 PPM1EQ8WY54 764 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 HLA-CQ95604 372 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 FGFBP2Q9BYJ0 223 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 GTPBP4Q9BZE4 634 aaKnown RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 ASB7Q9H672 318 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 UBE2ZQ9H832 354 aaPredicted RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 UBQLN1Q9UMX0 589 aaKnown RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 C2CD2Q9Y426 696 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 C2orf71A6NGG8 1288 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 CASTOR2A6NHX0 329 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 PRPF6O94906 941 aaKnown RBP12.9□□□□□ -0.34
VPS52-213ENST00000461743 RHOBTB3O94955 611 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 KIF4AO95239 1232 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 C1RP00736 705 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 RPN1P04843 607 aaKnown RBP12.9□□□□□ -0.34
VPS52-213ENST00000461743 ADSSP30520 456 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 TNFSF9P41273 254 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 GLUD2P49448 558 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 KCNA1Q09470 495 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 HYAL1Q12794 435 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 PTPN14Q15678 1187 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 UPP1Q16831 310 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 CTC1Q2NKJ3 1217 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 USP41Q3LFD5 358 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 ARMCX5Q6P1M9 558 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 PDXDC1Q6P996 788 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 HS2ST1Q7LGA3 356 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 BRSK2Q8IWQ3 736 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 C12orf56Q8IXR9 622 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 ENGASEQ8NFI3 743 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 MICAL1Q8TDZ2 1067 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 TMEM174Q8WUU8 243 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 SCFD1Q8WVM8 642 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 VN1R3Q9BXE9 311 aa12.9□□□□□ -0.34
VPS52-213ENST00000461743 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS52-213ENST00000461743 TCF20Q9UGU0 1960 aaKnown RBP12.9□□□□□ -0.34
VPS52-213ENST00000461743 A0A0C4DFX4 3053 aa12.9□□□□□ -0.35
VPS52-213ENST00000461743 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 TISP43B9A030 160 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 MEFVO15553 781 aaPredicted RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 TRAPPC3O43617 180 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 EXTL3O43909 919 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 PAX3P23760 479 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 CASP1P29466 404 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 LRPAP1P30533 357 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 DSG1Q02413 1049 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 SNW1Q13573 536 aaKnown RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 PUS10Q3MIT2 529 aaKnown RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 KMT5BQ4FZB7 885 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 DCLRE1AQ6PJP8 1040 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 CLEC17AQ6ZS10 378 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 ADGRD2Q7Z7M1 963 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 PPFIBP1Q86W92 1011 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 MRPL43Q8N983 215 aaKnown RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 KIAA0895Q8NCT3 520 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 KIF12Q96FN5 646 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 ZMAT2Q96NC0 199 aaKnown RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 EMILIN2Q9BXX0 1053 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 CXCL16Q9H2A7 254 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 TLE6Q9H808 572 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 KIAA1586Q9HCI6 787 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 MRPL17Q9NRX2 175 aaKnown RBP12.89□□□□□ -0.35
VPS52-213ENST00000461743 CHST7Q9NS84 486 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 RMND1Q9NWS8 449 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 CUL9Q8IWT3 2517 aa12.89□□□□□ -0.35
VPS52-213ENST00000461743 PODXLO00592 558 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 KINO60870 393 aaKnown RBP12.88□□□□□ -0.35
VPS52-213ENST00000461743 TADA2AO75478 443 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 PRR29P0C7W0 189 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 HOXD13P35453 343 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 NRIP1P48552 1158 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 CLCNKBP51801 687 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 UBE2HP62256 183 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 MRPS5P82675 430 aaKnown RBP12.88□□□□□ -0.35
VPS52-213ENST00000461743 SOX4Q06945 474 aaPredicted RBP12.88□□□□□ -0.35
VPS52-213ENST00000461743 TMEM132DQ14C87 1099 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 SURF1Q15526 300 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 ZBTB6Q15916 424 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 KNOP1Q1ED39 458 aaKnown RBP12.88□□□□□ -0.35
VPS52-213ENST00000461743 LEXMQ3ZCV2 418 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 SEZ6Q53EL9 994 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 ZBTB41Q5SVQ8 909 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 TMEM184AQ6ZMB5 413 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 GPD1LQ8N335 351 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 GLIS3Q8NEA6 775 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 BEST2Q8NFU1 509 aa12.88□□□□□ -0.35
VPS52-213ENST00000461743 HPS3Q969F9 1004 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms