RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SLC10A6Q3KNW5 377 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 RARS2Q5T160 578 aaKnown RBP25.1■■□□□ 1.61
PTPN4-208ENST00000460289 PDXDC1Q6P996 788 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 ZNF720Q7Z2F6 126 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 MAP4K3Q8IVH8 894 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 C12orf76Q8N812 135 aaPredicted RBP25.1■■□□□ 1.61
PTPN4-208ENST00000460289 KHSRPQ92945 711 aaKnown RBP eCLIP25.1■■□□□ 1.613e-6■■■■□ 21.2
PTPN4-208ENST00000460289 DNAJC19Q96DA6 116 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 ZMAT2Q96NC0 199 aaKnown RBP25.1■■□□□ 1.61
PTPN4-208ENST00000460289 SFXN1Q9H9B4 322 aa25.1■■□□□ 1.61
PTPN4-208ENST00000460289 A0A087X0B3 334 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 GLUD1P00367 558 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 RPL9P32969 192 aaKnown RBP25.09■■□□□ 1.61
PTPN4-208ENST00000460289 SEZ6Q53EL9 994 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 RTP2Q5QGT7 225 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 SFR1Q86XK3 245 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 CEP57Q86XR8 500 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 HVCN1Q96D96 273 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 RPGRIP1Q96KN7 1286 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 HAPLN2Q9GZV7 340 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 CUEDC2Q9H467 287 aa25.09■■□□□ 1.61
PTPN4-208ENST00000460289 GTF3C5Q9Y5Q8 519 aaPredicted RBP25.09■■□□□ 1.61
PTPN4-208ENST00000460289 OGTO15294 1046 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 SOX4Q06945 474 aaPredicted RBP25.08■■□□□ 1.61
PTPN4-208ENST00000460289 ZC2HC1CQ53FD0 456 aaPredicted RBP25.08■■□□□ 1.61
PTPN4-208ENST00000460289 SLFN12LQ6IEE8 588 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.08■■□□□ 1.61
PTPN4-208ENST00000460289 HDAC7Q8WUI4 952 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 PIK3R5Q8WYR1 880 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 MRPL44Q9H9J2 332 aaKnown RBP25.08■■□□□ 1.61
PTPN4-208ENST00000460289 GOLGA2P5Q9HBQ8 144 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 C5orf42Q9H799 3197 aa25.08■■□□□ 1.61
PTPN4-208ENST00000460289 A0A0B4J269 797 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 DCXO43602 365 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 IDEP14735 1019 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 HERC4Q5GLZ8 1057 aaPredicted RBP25.07■■□□□ 1.6
PTPN4-208ENST00000460289 TMC5Q6UXY8 1006 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 PALB2Q86YC2 1186 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 RNF135Q8IUD6 432 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 IQUBQ8NA54 791 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 LNX1Q8TBB1 728 aaPredicted RBP25.07■■□□□ 1.6
PTPN4-208ENST00000460289 MSTO1Q9BUK6 570 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 TNMDQ9H2S6 317 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 PLEKHA4Q9H4M7 779 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 MAN1C1Q9NR34 630 aa25.07■■□□□ 1.6
PTPN4-208ENST00000460289 MYH15Q9Y2K3 1946 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 PODXLO00592 558 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 MEFVO15553 781 aaPredicted RBP25.06■■□□□ 1.6
PTPN4-208ENST00000460289 CXCL8P10145 99 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 ME1P48163 572 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 AMPD3Q01432 767 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 PSMD5Q16401 504 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 AXDND1Q5T1B0 1012 aaPredicted RBP25.06■■□□□ 1.6
PTPN4-208ENST00000460289 SHC4Q6S5L8 630 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 PRSS55Q6UWB4 352 aaPredicted RBP25.06■■□□□ 1.6
PTPN4-208ENST00000460289 GPR149Q86SP6 731 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 TSPAN18Q96SJ8 248 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 RPF1Q9H9Y2 349 aaKnown RBP25.06■■□□□ 1.6
PTPN4-208ENST00000460289 OLFML3Q9NRN5 406 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 EXOC7Q9UPT5 735 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 NR2E1Q9Y466 385 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 PCDHB13Q9Y5F0 798 aa25.06■■□□□ 1.6
PTPN4-208ENST00000460289 TTC26A0AVF1 554 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 RPL17P18621 184 aaKnown RBP25.05■■□□□ 1.6
PTPN4-208ENST00000460289 FGFR3P22607 806 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 DNM1Q05193 864 aaKnown RBP25.05■■□□□ 1.6
PTPN4-208ENST00000460289 PPP2R3AQ06190 1150 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 KANK3Q6NY19 840 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 CD300LGQ6UXG3 332 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 C15orf39Q6ZRI6 1047 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 CD302Q8IX05 232 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 CMASQ8NFW8 434 aaPredicted RBP25.05■■□□□ 1.6
PTPN4-208ENST00000460289 C18orf25Q96B23 403 aaPredicted RBP25.05■■□□□ 1.6
PTPN4-208ENST00000460289 STRA6Q9BX79 667 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 POMKQ9H5K3 350 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 PANK4Q9NVE7 773 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 FAM13BQ9NYF5 915 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 RCOR1Q9UKL0 485 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 PCDHA7Q9UN72 937 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 TRIP11Q15643 1979 aa25.05■■□□□ 1.6
PTPN4-208ENST00000460289 FRMD3A2A2Y4 597 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 TGM5O43548 720 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 XPOTO43592 962 aaKnown RBP25.04■■□□□ 1.6
PTPN4-208ENST00000460289 FAM189A1O60320 539 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 PPP1R37O75864 691 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 WEE2P0C1S8 567 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 TNFSF9P41273 254 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 ALCAMQ13740 583 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 E2F4Q16254 413 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 ADALQ6DHV7 355 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 SLC39A4Q6P5W5 647 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 LILRA6Q6PI73 481 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 CYP26C1Q6V0L0 522 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 GLYCTKQ8IVS8 523 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 CCDC65Q8IXS2 484 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 C3orf58Q8NDZ4 430 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 ACCSQ96QU6 501 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 CLSTN3Q9BQT9 956 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 KBTBD4Q9NVX7 518 aa25.04■■□□□ 1.6
PTPN4-208ENST00000460289 TBC1D7Q9P0N9 293 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms