RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SLC5A5Q92911 643 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 GRAMD1AQ96CP6 724 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 RBM17Q96I25 401 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 GMCL1Q96IK5 515 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 DYDC2Q96IM9 177 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 MAGEB18Q96M61 343 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ZNF570Q96NI8 536 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 AGAP3Q96P47 875 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CCDC113Q9H0I3 377 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 UBE2TQ9NPD8 197 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 SPATS2LQ9NUQ6 558 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 SLC5A4Q9NY91 659 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 UVRAGQ9P2Y5 699 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 EMSYQ7Z589 1322 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 TMEM110-MUSTN1A8MSY1 372 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 EXOC3O60645 756 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 SNUPNO95149 360 aaKnown RBP9.07□□□□□ -0.96
VPS50-208ENST00000458707 MAN1A1P33908 653 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 KCNJ1P48048 391 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 KRT17Q04695 432 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 CETN1Q12798 172 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 PTK6Q13882 451 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 MPP2Q14168 576 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 LRRC14Q15048 493 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 MTFR1Q15390 333 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 ODR4Q5SWX8 454 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 C1orf220Q5T0J3 134 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 CGB2Q6NT52 195 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 NOP9Q86U38 636 aaKnown RBP9.07□□□□□ -0.96
VPS50-208ENST00000458707 RELL1Q8IUW5 271 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 TPH2Q8IWU9 490 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 ANKLE1Q8NAG6 615 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 ZNF564Q8TBZ8 553 aaPredicted RBP9.07□□□□□ -0.96
VPS50-208ENST00000458707 SNRNP27Q8WVK2 155 aaKnown RBP9.07□□□□□ -0.96
VPS50-208ENST00000458707 THOC1Q96FV9 657 aaKnown RBP9.07□□□□□ -0.96
VPS50-208ENST00000458707 SNF8Q96H20 258 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 NACC1Q96RE7 527 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 CRAMP1Q96RY5 1269 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 WDR18Q9BV38 432 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 NUP85Q9BW27 656 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 COA1Q9GZY4 146 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 EURLQ9NYK6 297 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 GTF3C4Q9UKN8 822 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 PTPN22Q9Y2R2 807 aa9.07□□□□□ -0.96
VPS50-208ENST00000458707 ZBTB39O15060 712 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 HRO43593 1189 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SPOPO43791 374 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SORBS3O60504 671 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ACSL3O95573 720 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 MAPTP10636 758 aaKnown RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 ALDH1B1P30837 517 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ZNF76P36508 570 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 VAMP7P51809 220 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 DLG4P78352 724 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 PPP3CAQ08209 521 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 MGAT5Q09328 741 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SF3A3Q12874 501 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS50-208ENST00000458707 ALCAMQ13740 583 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 RASA3Q14644 834 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 PARP6Q2NL67 630 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 TRAPPC3LQ5T215 181 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 APOBEC3HQ6NTF7 200 aaKnown RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 TATDN1Q6P1N9 297 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ARHGEF18Q6ZSZ5 1173 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 OTUD6AQ7L8S5 288 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 CCDC25Q86WR0 208 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 MAIP1Q8WWC4 291 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 TGS1Q96RS0 853 aaKnown RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 PLVAPQ9BX97 442 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 TRIM7Q9C029 511 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ADAM22Q9P0K1 906 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 PPP1R1BQ9UD71 204 aaPredicted RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 CCNL1Q9UK58 526 aaPredicted RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 PNMA3Q9UL41 463 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 THSD7AQ9UPZ6 1657 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SCN9AQ15858 1988 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 F5H6K3 240 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 MAGEB2O15479 319 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 DIAPH2O60879 1101 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 UNC5CO95185 931 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SGPL1O95470 568 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 GH1P01241 217 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 BRAFP15056 766 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 CHKAP35790 457 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 LACTBP83111 547 aaPredicted RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 FMO1Q01740 532 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 STRN3Q13033 797 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 USH1GQ495M9 461 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ZNF746Q6NUN9 644 aaPredicted RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 B3GNT9Q6UX72 402 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 ERICH1Q86X53 443 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 CPNE8Q86YQ8 564 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 DAW1Q8N136 415 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 MGARPQ8TDB4 240 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 SHC3Q92529 594 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 PRCCQ92733 491 aaPredicted RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 RMDN2Q96LZ7 410 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 POP1Q99575 1024 aaKnown RBP9.06□□□□□ -0.96
VPS50-208ENST00000458707 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
VPS50-208ENST00000458707 KLHL14Q9P2G3 628 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms