RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZNF461Q8TAF7 563 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 ZSCAN31Q96LW9 406 aaPredicted RBP14.6□□□□□ -0.07
HMGB3-204ENST00000448905 PPP1R10Q96QC0 940 aaKnown RBP14.6□□□□□ -0.07
HMGB3-204ENST00000448905 HINFPQ9BQA5 517 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 RPP25Q9BUL9 199 aaKnown RBP14.6□□□□□ -0.07
HMGB3-204ENST00000448905 OSBPL6Q9BZF3 934 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 USP20Q9Y2K6 914 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 CDY1Q9Y6F8 540 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 R4GN57 208 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 MYO15AQ9UKN7 3530 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 C2orf16Q68DN1 1984 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 PRRG1O14668 218 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 ZNF197O14709 1029 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 LAMTOR5O43504 91 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 LRG1P02750 347 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 RPL9P32969 192 aaKnown RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 GRM5P41594 1212 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 MAGEA9P43362 315 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 MLF2Q15773 248 aaPredicted RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 ZBTB41Q5SVQ8 909 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 NT5DC1Q5TFE4 455 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 KRT79Q5XKE5 535 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 EEF1DP3Q658K8 133 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 ST13P5Q8NFI4 369 aaPredicted RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 FBXO18Q8NFZ0 1043 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 ITFG1Q8TB96 612 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 RUBCNQ92622 972 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 TMEM134Q9H6X4 195 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 C17orf75Q9HAS0 396 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 SPATA6Q9NWH7 488 aaPredicted RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 DLGAP2Q9P1A6 1054 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 DNMT3BQ9UBC3 853 aaKnown RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 MRPS17Q9Y2R5 130 aaKnown RBP14.59□□□□□ -0.07
HMGB3-204ENST00000448905 NUB1Q9Y5A7 615 aa14.59□□□□□ -0.07
HMGB3-204ENST00000448905 ADAM12O43184 909 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 KINO60870 393 aaKnown RBP14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ECI2O75521 394 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 PEX3P56589 373 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 DMP1Q13316 513 aaPredicted RBP14.58□□□□□ -0.08
HMGB3-204ENST00000448905 UBXN2BQ14CS0 331 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ZNF528Q3MIS6 628 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 GLRA4Q5JXX5 417 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ZNF852Q6ZMS4 543 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ELMOD1Q8N336 334 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ATRIPQ8WXE1 791 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 DRC1Q96MC2 740 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ACAP3Q96P50 834 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 ACO2Q99798 780 aaKnown RBP14.58□□□□□ -0.08
HMGB3-204ENST00000448905 KIFC3Q9BVG8 833 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 MRPL4Q9BYD3 311 aaKnown RBP14.58□□□□□ -0.08
HMGB3-204ENST00000448905 POLD4Q9HCU8 107 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 DDX19AQ9NUU7 478 aaKnown RBP14.58□□□□□ -0.08
HMGB3-204ENST00000448905 PPP4R2Q9NY27 417 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 FBXO4Q9UKT5 387 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 DENND4AQ7Z401 1863 aa14.58□□□□□ -0.08
HMGB3-204ENST00000448905 LAD1O00515 517 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 RHOP08100 348 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 MCF2P10911 925 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 TKTP29401 623 aaKnown RBP14.57□□□□□ -0.08
HMGB3-204ENST00000448905 MARCKSP29966 332 aaPredicted RBP14.57□□□□□ -0.08
HMGB3-204ENST00000448905 NPTX2P47972 431 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 SMTNP53814 917 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 ARPP19P56211 112 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 OSTNP61366 133 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 STRN3Q13033 797 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 ZNF568Q3ZCX4 644 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 CYP4A22Q5TCH4 519 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 IQCEQ6IPM2 695 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 SLC8B1Q6J4K2 584 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 ALKAL1Q6UXT8 129 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 CCDC83Q8IWF9 413 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 SNX29Q8TEQ0 813 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 SECISBP2LQ93073 1101 aaKnown RBP14.57□□□□□ -0.08
HMGB3-204ENST00000448905 MCRS1Q96EZ8 462 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 KXD1Q9BQD3 176 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 TIPINQ9BVW5 301 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 FOXQ1Q9C009 403 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 CXCL16Q9H2A7 254 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 KMT5AQ9NQR1 393 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 AVENQ9NQS1 362 aaPredicted RBP14.57□□□□□ -0.08
HMGB3-204ENST00000448905 HCFC1R1Q9NWW0 138 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 MAFFQ9ULX9 164 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 VPS13AQ96RL7 3174 aa14.57□□□□□ -0.08
HMGB3-204ENST00000448905 SYN3O14994 580 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 MICAL2O94851 1124 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 ABLIM3O94929 683 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 ATF2P15336 505 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 PTGDRQ13258 359 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 XKR4Q5GH76 650 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 TPGS2Q68CL5 300 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 DTHD1Q6ZMT9 781 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 NPAS3Q8IXF0 933 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 KIAA2013Q8IYS2 634 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 KCTD17Q8N5Z5 321 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 GPR161Q8N6U8 529 aaKnown RBP14.56□□□□□ -0.08
HMGB3-204ENST00000448905 APPL2Q8NEU8 664 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 ZNF512Q96ME7 567 aaPredicted RBP14.56□□□□□ -0.08
HMGB3-204ENST00000448905 DDX23Q9BUQ8 820 aaKnown RBP14.56□□□□□ -0.08
HMGB3-204ENST00000448905 CYP4F11Q9HBI6 524 aa14.56□□□□□ -0.08
HMGB3-204ENST00000448905 SH2B1Q9NRF2 756 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms