RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PIAS1O75925 651 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ANP32DO95626 131 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 RARRES1P49788 294 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ARSEP51690 589 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ZDHHC24Q6UX98 284 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 WDR64B1ANS9 1081 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GH1P01241 217 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ADRB2P07550 413 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 NQO1P15559 274 aaKnown RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 PSMC5P62195 406 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 SV2AQ7L0J3 742 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 SLC17A8Q8NDX2 589 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GMCL1P1Q8NEA9 526 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 MORC4Q8TE76 937 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 CCT6BQ92526 530 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 TAAR1Q96RJ0 339 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GLIS2Q9BZE0 524 aaPredicted RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 MRPL47Q9HD33 250 aaKnown RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.62□□□□□ -0.39
MSH6-204ENST00000445503 A0A0G2JND7 137 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 CDH16O75309 829 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GNA15P30679 374 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 HOXA10P31260 410 aaPredicted RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 DNAJC24Q6P3W2 148 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 RHOT1Q8IXI2 618 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GBP7Q8N8V2 638 aaPredicted RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 LRRC37BQ96QE4 947 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 YY1AP1Q9H869 796 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 NAALADL1Q9UQQ1 740 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ASAP2O43150 1006 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 NUDT17P0C025 328 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 MMP13P45452 471 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 COPS2P61201 443 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 JAG1P78504 1218 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 PDIA2Q13087 525 aaKnown RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 PPP2R5CQ13362 524 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 SPARCL1Q14515 664 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ANKRD20A3Q5VUR7 823 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 RPTORQ8N122 1335 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 C1orf131Q8NDD1 294 aaKnown RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 IL31RAQ8NI17 732 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 CERKQ8TCT0 537 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 SPIRE2Q8WWL2 714 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 SEMA4DQ92854 862 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 RIT2Q99578 217 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ROPN1BQ9BZX4 212 aaPredicted RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 MTFR1LQ9H019 292 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 ROPN1Q9HAT0 212 aaPredicted RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 ZDHHC18Q9NUE0 388 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 GRHL1Q9NZI5 618 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 KCND2Q9NZV8 630 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 NXF1Q9UBU9 619 aaKnown RBP12.62□□□□□ -0.39
MSH6-204ENST00000445503 PCDHA3Q9Y5H8 950 aa12.62□□□□□ -0.39
MSH6-204ENST00000445503 TTC4O95801 387 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TROVE2P10155 538 aaKnown RBP eCLIP12.61□□□□□ -0.39
MSH6-204ENST00000445503 MAGEA4P43358 317 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 BASP1P80723 227 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 ITIH4Q14624 930 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TRABDQ9H4I3 376 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.61□□□□□ -0.39
MSH6-204ENST00000445503 TBX20Q9UMR3 447 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 SNX3O60493 162 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 GZMAP12544 262 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 ITGB5P18084 799 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 ALDH5A1P51649 535 aaPredicted RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 FMO1Q01740 532 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 ZRSR2Q15696 482 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 ACCSLQ4AC99 568 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 SCYL3Q8IZE3 742 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 ATP6V0A1Q93050 837 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TLCD1Q96CP7 247 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 KREMEN1Q96MU8 473 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 MAK16Q9BXY0 300 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 QTRT2Q9H974 415 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 TMEM8AQ9HCN3 771 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 GINM1Q9NU53 330 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 CNOT7Q9UIV1 285 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 GGA2Q9UJY4 613 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 FEM1BQ9UK73 627 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 UBE4BO95155 1302 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 IGLV3-22A0A075B6J6 115 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 RASSF9O75901 435 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 PDHA1P08559 390 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 ZSCAN5DPP0CG00 497 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TARSP26639 723 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 NPTX2P47972 431 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 YWHAGP61981 247 aaKnown RBP eCLIP12.61□□□□□ -0.39
MSH6-204ENST00000445503 NOP14P78316 857 aaKnown RBP12.61□□□□□ -0.39
MSH6-204ENST00000445503 TKFCQ3LXA3 575 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 SIAH1Q8IUQ4 282 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 PYROXD1Q8WU10 500 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TMEM143Q96AN5 459 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TRIM11Q96F44 468 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 SERPINB12Q96P63 405 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TBC1D22BQ9NU19 505 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 TXLNGQ9NUQ3 528 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 NEU2Q9Y3R4 380 aa12.61□□□□□ -0.39
MSH6-204ENST00000445503 K7ERI5 159 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 MAPK13O15264 365 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms