RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CDK11BP21127 795 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 EEF1GP26641 437 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 MTIF2P46199 727 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 GATMP50440 423 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 SCNN1GP51170 649 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 AFF1P51825 1210 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 SPAG1Q07617 926 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 GRIK3Q13003 919 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 KCNJ12Q14500 433 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 TMEM132DQ14C87 1099 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 HSP90AA4PQ58FG1 418 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 WDR49Q8IV35 697 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 TRIM59Q8IWR1 403 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 GSTCDQ8NEC7 633 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 PLEKHO2Q8TD55 490 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 ZNF689Q96CS4 500 aaPredicted RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 ZMAT2Q96NC0 199 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 YME1L1Q96TA2 773 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 CGRRF1Q99675 332 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 SLC38A7Q9NVC3 462 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 C2CD2Q9Y426 696 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 INSL6Q9Y581 213 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 LRRIQ3A6PVS8 624 aaPredicted RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 POMCP01189 267 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 AP3M2P53677 418 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 WNT7BP56706 349 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 CLDN10P78369 228 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 HTRA4P83105 476 aaPredicted RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 RNASELQ05823 741 aaKnown RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 ZBTB6Q15916 424 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 DUOXA2Q1HG44 320 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 TCP11X2Q5H9J9 407 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 GLRA4Q5JXX5 417 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 TCERG1LQ5VWI1 586 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 CMTR2Q8IYT2 770 aaKnown RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 ANKRD20A12PQ8NF67 263 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 BEST2Q8NFU1 509 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 ANKRD36BP1Q96IX9 119 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 FAM193BQ96PV7 902 aaPredicted RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 PPP1R10Q96QC0 940 aaKnown RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 RAD9AQ99638 391 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 TBC1D13Q9NVG8 400 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 INTS13Q9NVM9 706 aa17.09■□□□□ 0.33
USP40-206ENST00000443711 UBQLN1Q9UMX0 589 aaKnown RBP17.09■□□□□ 0.33
USP40-206ENST00000443711 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.09■□□□□ 0.33
USP40-206ENST00000443711 TLL1O43897 1013 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 TNNC2P02585 160 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 NFICP08651 508 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 TMEM191BP0C7N4 346 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 ZNF18P17022 549 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 CYP3A5P20815 502 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 GTF2H1P32780 548 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 DLG4P78352 724 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 TFAMQ00059 246 aaKnown RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 BTG3Q14201 252 aaPredicted RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 PAN2Q504Q3 1202 aaKnown RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 DCAF17Q5H9S7 520 aaPredicted RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 CHRDL2Q6WN34 429 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 GAS2L3Q86XJ1 694 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 EFCAB13Q8IY85 973 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 TDHQ8IZJ6 230 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 LRRC43Q8N309 656 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 RNF214Q8ND24 703 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 POP1Q99575 1024 aaKnown RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 HSD3B7Q9H2F3 369 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 RC3H2Q9HBD1 1191 aaKnown RBP17.08■□□□□ 0.32
USP40-206ENST00000443711 PLAGL2Q9UPG8 496 aa17.08■□□□□ 0.32
USP40-206ENST00000443711 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.07■□□□□ 0.32
USP40-206ENST00000443711 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.07■□□□□ 0.32
USP40-206ENST00000443711 TPM2P07951 284 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 TRIM49P0CI25 452 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 TRIM49CP0CI26 452 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 TUSC3Q13454 348 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 C1orf220Q5T0J3 134 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 LMBRD2Q68DH5 695 aaPredicted RBP17.07■□□□□ 0.32
USP40-206ENST00000443711 ZNF516Q92618 1163 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 SLC35C1Q96A29 364 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 TUBGCP2Q9BSJ2 902 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 DPP3Q9NY33 737 aa17.07■□□□□ 0.32
USP40-206ENST00000443711 LIMA1Q9UHB6 759 aaKnown RBP17.07■□□□□ 0.32
USP40-206ENST00000443711 PTPRJQ12913 1337 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 KCNH2Q12809 1159 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 KRT31Q15323 416 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 NAB2Q15742 525 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 MAN2A1Q16706 1144 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 FIBCD1Q8N539 461 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 OR5B17Q8NGF7 314 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 C18orf25Q96B23 403 aaPredicted RBP17.06■□□□□ 0.32
USP40-206ENST00000443711 DDX27Q96GQ7 796 aaKnown RBP17.06■□□□□ 0.32
USP40-206ENST00000443711 UROC1Q96N76 676 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 RBSNQ9H1K0 784 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 PRO3102Q9H379 93 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 COL4A6Q14031 1691 aa17.06■□□□□ 0.32
USP40-206ENST00000443711 LRRC10BA6NIK2 292 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 GRXCR1A8MXD5 290 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 PHACTR2O75167 634 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 DDHD2O94830 711 aa17.05■□□□□ 0.32
USP40-206ENST00000443711 AFPP02771 609 aaKnown RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 C4BPAP04003 597 aaKnown RBP17.05■□□□□ 0.32
USP40-206ENST00000443711 ATP1A3P13637 1013 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms