RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MTMR12Q9C0I1 747 aa22.75■■□□□ 1.23
PTPRF-207ENST00000436724 TACC1O75410 805 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 ALDH1A1P00352 501 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 PSEN2P49810 448 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 TRIM58Q8NG06 486 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 PDZD7Q9H5P4 517 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 CDHR5Q9HBB8 845 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 C1orf112Q9NSG2 853 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 TAS2R14Q9NYV8 317 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 CDC23Q9UJX2 597 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 TRIP12Q14669 1992 aaPredicted RBP22.74■■□□□ 1.23
PTPRF-207ENST00000436724 C6orf222P0C671 652 aaPredicted RBP22.74■■□□□ 1.23
PTPRF-207ENST00000436724 ANXA13P27216 316 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 DEFB115Q30KQ5 88 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 FMNL3Q8IVF7 1028 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 TXLNBQ8N3L3 684 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 AGPAT1Q99943 283 aa22.74■■□□□ 1.23
PTPRF-207ENST00000436724 APOBEC3GQ9HC16 384 aaKnown RBP22.74■■□□□ 1.23
PTPRF-207ENST00000436724 HAS3O00219 553 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 SRGAP2O75044 1071 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CST3P01034 146 aaPredicted RBP22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CALCAP01258 141 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CXCL8P10145 99 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CYBAP13498 195 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 TNFAIP3P21580 790 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 TAF3Q5VWG9 929 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 NOP9Q86U38 636 aaKnown RBP22.73■■□□□ 1.23
PTPRF-207ENST00000436724 KRT222Q8N1A0 295 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 EPS8L1Q8TE68 723 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 VTI1AQ96AJ9 217 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 Q9Y3F1 56 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 PHACTR2O75167 634 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CLSTN1O94985 981 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 CYP2C9P11712 490 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 GCNT1Q02742 428 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 WDR44Q5JSH3 913 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 C10orf76Q5T2E6 689 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 WDR49Q8IV35 697 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 NOX5Q96PH1 765 aa22.73■■□□□ 1.23
PTPRF-207ENST00000436724 MBLAC1A4D2B0 266 aaPredicted RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 TREHO43280 583 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 TSPAN1O60635 241 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 ZC3H11AO75152 810 aaKnown RBP eCLIP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 NCOA4Q13772 614 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 UMODL1Q5DID0 1318 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 EFCAB13Q8IY85 973 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 RPUSD2Q8IZ73 545 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 ADAMTS10Q9H324 1103 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 NOCTQ9UK39 431 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 MEFVO15553 781 aaPredicted RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 PGK1P00558 417 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 ADAM17P78536 824 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 TFAMQ00059 246 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 PURAQ00577 322 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 TRAPPC11Q7Z392 1133 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 TMEM130Q8N3G9 435 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 RNF10Q8N5U6 811 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 DNAJB3Q8WWF6 145 aa22.72■■□□□ 1.23
PTPRF-207ENST00000436724 PUF60Q9UHX1 559 aaKnown RBP22.72■■□□□ 1.23
PTPRF-207ENST00000436724 DUSP11O75319 330 aaKnown RBP22.71■■□□□ 1.23
PTPRF-207ENST00000436724 GPR32O75388 356 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 ERLIN2O94905 339 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 H2AFZP0C0S5 128 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 KRT5P13647 590 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 CHRNB2P17787 502 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 GALCP54803 685 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 MFSD14CQ5VZR4 134 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 PAPD7Q5XG87 772 aaKnown RBP22.71■■□□□ 1.23
PTPRF-207ENST00000436724 H2AFVQ71UI9 128 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 ZNF410Q86VK4 478 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 ALS2CR12Q96Q35 445 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 OSMRQ99650 979 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 EPC1Q9H2F5 836 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 NUB1Q9Y5A7 615 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 ANK1P16157 1881 aa22.71■■□□□ 1.23
PTPRF-207ENST00000436724 STAG3L1P0CL83 205 aa22.7■■□□□ 1.23
PTPRF-207ENST00000436724 GNASQ5JWF2 1037 aa22.7■■□□□ 1.23
PTPRF-207ENST00000436724 RSRC2Q7L4I2 434 aaKnown RBP22.7■■□□□ 1.23
PTPRF-207ENST00000436724 JRKLQ9Y4A0 524 aa22.7■■□□□ 1.23
PTPRF-207ENST00000436724 NCK2O43639 380 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 PALMO75781 387 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 CYP11B1P15538 503 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 ABCB4P21439 1286 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 NOP14P78316 857 aaKnown RBP22.7■■□□□ 1.22
PTPRF-207ENST00000436724 DUOXA2Q1HG44 320 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 PCDHB18PQ96TA0 734 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 RPF1Q9H9Y2 349 aaKnown RBP22.7■■□□□ 1.22
PTPRF-207ENST00000436724 RNF186Q9NXI6 227 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 SAR1BQ9Y6B6 198 aa22.7■■□□□ 1.22
PTPRF-207ENST00000436724 SMIM35A0A1B0GVV1 85 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 ZRANB2O95218 330 aaKnown RBP eCLIP22.69■■□□□ 1.223e-7■■■■■ 46.6
PTPRF-207ENST00000436724 MMEP08473 750 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 ELNP15502 786 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 SP3Q02447 781 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 SRGAP1Q7Z6B7 1085 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 ANO9A1A5B4 782 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 MCF2P10911 925 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 MYL6P60660 151 aa22.69■■□□□ 1.22
PTPRF-207ENST00000436724 CACNB2Q08289 660 aaPredicted RBP22.69■■□□□ 1.22
PTPRF-207ENST00000436724 CUL2Q13617 745 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms