RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 HS6ST3Q8IZP7 471 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 GRAP2O75791 330 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 B4GALNT2Q8NHY0 566 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 PDIA2Q13087 525 aaKnown RBP12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 GGA3Q9NZ52 723 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 RGPD2P0DJD1 1756 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 E2F5Q15329 346 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 GPRC5AQ8NFJ5 357 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 OSBPL9Q96SU4 736 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 RCOR1Q9UKL0 485 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 FER1L6Q2WGJ9 1857 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 PRR23AA6NEV1 266 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 PDGFRBP09619 1106 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 SYT2Q8N9I0 419 aaPredicted RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 BHMTQ93088 406 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 TRAF3IP3Q9Y228 551 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 PSMD14O00487 310 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 LARGE1O95461 756 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 TFRCP02786 760 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 HMBSP08397 361 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 WDR75Q8IWA0 830 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 TUFT1Q9NNX1 390 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 HSPBP1Q9NZL4 362 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 RFX7Q2KHR2 1363 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 JCADQ9P266 1359 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 PP2D1A8MPX8 630 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 SKIP12755 728 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 CDC42EP1Q00587 391 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 ZNF211Q13398 564 aaPredicted RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 ARHGEF7Q14155 803 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 RGS9BPQ6ZS82 235 aa12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 MRPL40Q9NQ50 206 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 SCAF8Q9UPN6 1271 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-207ENST00000436346 HSPA1AP0DMV8 641 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 HSPA1BP0DMV9 641 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 PKN3Q6P5Z2 889 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 EMBQ6PCB8 327 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 TMEM39BQ9GZU3 492 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 ADGRA2Q96PE1 1338 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 APRTP07741 180 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 MFSD4BQ5TF39 518 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 CLMNQ96JQ2 1002 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 SUPT3HB4E1H0 165 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 SUPT3HO75486 399 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 ALDH7A1P49419 539 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 NFIXQ14938 502 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RAP1GDS1P52306 607 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 PABPC5Q96DU9 382 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 HPS4Q9NQG7 708 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 CHCHD3Q9NX63 227 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 ZBTB17Q13105 803 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 R3HDM1Q15032 1099 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.7□□□□□ -0.387e-12■□□□□ 8.9
CCDC88A-207ENST00000436346 PARP4Q9UKK3 1724 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RSPH10B2B2RC85 870 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RSPH10BP0C881 870 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 PDAP1Q13442 181 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 ENOSF1Q7L5Y1 443 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 MED15Q96RN5 788 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 EMC2Q15006 297 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 FAM47EQ6ZV65 393 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RFWD2Q8NHY2 731 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 LATS2Q9NRM7 1088 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 IL18RAPO95256 599 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 TDP2O95551 362 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 AARSP49588 968 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 PDCLQ13371 301 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 ZC3H12BQ5HYM0 836 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RHOT1Q8IXI2 618 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 CPA5Q8WXQ8 436 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 GOLPH3LQ9H4A5 285 aa12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 RRP15Q9Y3B9 282 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-207ENST00000436346 GRIN3BO60391 1043 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 NCOA4Q13772 614 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CCDC85BQ15834 202 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 LRRC8EQ6NSJ5 796 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 GTF3C2Q8WUA4 911 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 SH2D3AQ9BRG2 576 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 WARS2Q9UGM6 360 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 POLRMTO00411 1230 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PJA2O43164 708 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 EIF3EP60228 445 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 MAGOHP61326 146 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 NOTUMQ6P988 496 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PCDHGB4Q9UN71 923 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 AP3M2P53677 418 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 KCNB1Q14721 858 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 COBLL1Q53SF7 1204 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 GSPT2Q8IYD1 628 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 ABTB1Q969K4 478 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 MYOZ2Q9NPC6 264 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 H7C1W4 665 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 SLC9A5Q14940 896 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 P3H1Q32P28 736 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PRAMEF18Q5VWM3 479 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 ST13P4Q8IZP2 240 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CCL15-CCL14A0A0B4J2E2 113 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 GH1P01241 217 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 ACOT2P49753 483 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms