RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ANKFY1Q9P2R3 1169 aa18.73■□□□□ 0.59
TRIM39-209ENST00000428728 POLIQ9UNA4 740 aa18.73■□□□□ 0.59
TRIM39-209ENST00000428728 SMIM28A0A1B0GU29 152 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 CCL16O15467 120 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 FGFR3P22607 806 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 OR1D2P34982 312 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 NTHL1P78549 312 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 UPP1Q16831 310 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 DCLRE1AQ6PJP8 1040 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 MPZL3Q6UWV2 235 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 SLC7A14Q8TBB6 771 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 DDX27Q96GQ7 796 aaKnown RBP18.72■□□□□ 0.59
TRIM39-209ENST00000428728 SNX27Q96L92 541 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 C17orf75Q9HAS0 396 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 PTPRHQ9HD43 1115 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 MTRRQ9UBK8 725 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 RBM19Q9Y4C8 960 aaKnown RBP18.72■□□□□ 0.59
TRIM39-209ENST00000428728 CACNA1HO95180 2353 aa18.72■□□□□ 0.59
TRIM39-209ENST00000428728 ABLIM1O14639 778 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 HNRNPA1P09651 372 aaKnown RBP eCLIP18.71■□□□□ 0.59
TRIM39-209ENST00000428728 MCF2P10911 925 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 LAMP2P13473 410 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 FSHRP23945 695 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 GUCY2CP25092 1073 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 CLCN5P51795 746 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 NUBP1P53384 320 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 CACNB1Q02641 598 aaPredicted RBP18.71■□□□□ 0.59
TRIM39-209ENST00000428728 STRN3Q13033 797 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 HYIQ5T013 277 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 CD300LGQ6UXG3 332 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 ZBTB45Q96K62 511 aaPredicted RBP18.71■□□□□ 0.59
TRIM39-209ENST00000428728 ZMAT2Q96NC0 199 aaKnown RBP18.71■□□□□ 0.59
TRIM39-209ENST00000428728 ACAP3Q96P50 834 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 TIPINQ9BVW5 301 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 IRF2BPLQ9H1B7 796 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.71■□□□□ 0.59
TRIM39-209ENST00000428728 CA14Q9ULX7 337 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 SMC3Q9UQE7 1217 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 CDY1Q9Y6F8 540 aa18.71■□□□□ 0.59
TRIM39-209ENST00000428728 NPHP3-ACAD11A0A0J9YXS1 232 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 PODXLO00592 558 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 TRAPPC3O43617 180 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 NPR3P17342 541 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 RFX1P22670 979 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 PROZP22891 400 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 SLC12A3P55017 1021 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 HTR4Q13639 388 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 NOLC1Q14978 699 aaKnown RBP eCLIP18.7■□□□□ 0.58
TRIM39-209ENST00000428728 SEZ6Q53EL9 994 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 AXDND1Q5T1B0 1012 aaPredicted RBP18.7■□□□□ 0.58
TRIM39-209ENST00000428728 RSPO2Q6UXX9 243 aaPredicted RBP18.7■□□□□ 0.58
TRIM39-209ENST00000428728 SLC44A3Q8N4M1 653 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 SYT2Q8N9I0 419 aaPredicted RBP18.7■□□□□ 0.58
TRIM39-209ENST00000428728 SLC38A7Q9NVC3 462 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 DAXXQ9UER7 740 aaPredicted RBP18.7■□□□□ 0.58
TRIM39-209ENST00000428728 NUMBLQ9Y6R0 609 aa18.7■□□□□ 0.58
TRIM39-209ENST00000428728 TCHHQ07283 1943 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 STK25O00506 426 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 XYLBO75191 536 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 PLA2G4BP0C869 781 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 PLS3P13797 630 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 AOC1P19801 751 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 HOXA9P31269 272 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 MATR3P43243 847 aaKnown RBP eCLIP18.69■□□□□ 0.58
TRIM39-209ENST00000428728 SMTNP53814 917 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 RAB33AQ14088 237 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 TMEM119Q4V9L6 283 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 XKR4Q5GH76 650 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 ALKAL1Q6UXT8 129 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 ANKS3Q6ZW76 656 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 TMEM161BQ8NDZ6 487 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 SPIRE2Q8WWL2 714 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 C18orf25Q96B23 403 aaPredicted RBP18.69■□□□□ 0.58
TRIM39-209ENST00000428728 HCFC1R1Q9NWW0 138 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 CNTN3Q9P232 1028 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 COL4A3Q01955 1670 aa18.69■□□□□ 0.58
TRIM39-209ENST00000428728 TSC2P49815 1807 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 KRBA1A5PL33 1030 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 MEFVO15553 781 aaPredicted RBP18.68■□□□□ 0.58
TRIM39-209ENST00000428728 PI15O43692 258 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 GFRA3O60609 400 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 MAPTP10636 758 aaKnown RBP18.68■□□□□ 0.58
TRIM39-209ENST00000428728 SRFP11831 508 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 ARL6IP4Q66PJ3 421 aaKnown RBP18.68■□□□□ 0.58
TRIM39-209ENST00000428728 NXPE3Q969Y0 559 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 BICD1Q96G01 975 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 CDH7Q9ULB5 785 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 NUB1Q9Y5A7 615 aa18.68■□□□□ 0.58
TRIM39-209ENST00000428728 ANHXE9PGG2 379 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 TOM1L1O75674 476 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 KCNE1P15382 129 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 MCM2P49736 904 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 ROR1Q01973 937 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 DHX8Q14562 1220 aaKnown RBP18.67■□□□□ 0.58
TRIM39-209ENST00000428728 VARS2Q5ST30 1063 aaKnown RBP18.67■□□□□ 0.58
TRIM39-209ENST00000428728 LARP1BQ659C4 914 aaKnown RBP18.67■□□□□ 0.58
TRIM39-209ENST00000428728 ITFG1Q8TB96 612 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 GPR152Q8TDT2 470 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 ING5Q8WYH8 240 aa18.67■□□□□ 0.58
TRIM39-209ENST00000428728 NTPCRQ9BSD7 190 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms