RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SLC9A9Q8IVB4 645 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 CCDC33Q8N5R6 958 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 MGARPQ8TDB4 240 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 GPRASP2Q96D09 838 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 PBKQ96KB5 322 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 ANKEF1Q9NU02 776 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 POLIQ9UNA4 740 aa12.77□□□□□ -0.36
PTPRN-204ENST00000423636 VTNP04004 478 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 NRLP54845 237 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 XKR3Q5GH77 459 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 WDR44Q5JSH3 913 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 TXNRD3NBQ6F5E7 133 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 ATP8B4Q8TF62 1192 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 KIFAP3Q92845 792 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SPATA33Q96N06 139 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 CXCL16Q9H2A7 254 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SEMA4AQ9H3S1 761 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 DAAM1Q9Y4D1 1078 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 RTN2O75298 545 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 CD19P15391 556 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 RPL21P46778 160 aaKnown RBP12.77□□□□□ -0.37
PTPRN-204ENST00000423636 KCNT1Q5JUK3 1230 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 EEF1DP3Q658K8 133 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 EMBQ6PCB8 327 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SLFN11Q7Z7L1 901 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 JAMLQ86YT9 394 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SYCE1Q8N0S2 351 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 ACTRT1Q8TDG2 376 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SHC3Q92529 594 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 LENG1Q96BZ8 264 aaPredicted RBP12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SCLT1Q96NL6 688 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 RNPEPQ9H4A4 650 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 TBK1Q9UHD2 729 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 TMEM59LQ9UK28 342 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 SYNPO2Q9UMS6 1093 aa12.77□□□□□ -0.37
PTPRN-204ENST00000423636 EVPLQ92817 2033 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 SSC5DA1L4H1 1573 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 RBBP6Q7Z6E9 1792 aaKnown RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 FARP2O94887 1054 aaPredicted RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 ATF7P17544 494 aaPredicted RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 PPP1R7Q15435 360 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 APOBEC3FQ8IUX4 373 aaKnown RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 IQCKQ8N0W5 287 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 DDX23Q9BUQ8 820 aaKnown RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 CCDC172P0C7W6 258 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 ZSCAN5DPP0CG00 497 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 ETS1P14921 441 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 AARSP49588 968 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 MAGOHP61326 146 aaKnown RBP12.76□□□□□ -0.37
PTPRN-204ENST00000423636 C10orf76Q5T2E6 689 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 ZSWIM1Q9BR11 485 aa12.76□□□□□ -0.37
PTPRN-204ENST00000423636 MYO1FO00160 1098 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GRIN3BO60391 1043 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 MYCNP04198 464 aaPredicted RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 IQCF3P0C7M6 154 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GNA15P30679 374 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 IFNAR2P48551 515 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 TAS2R40P59535 323 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 MAP1SQ66K74 1059 aaPredicted RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 ISCUQ9H1K1 167 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 AZI2Q9H6S1 392 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GRAP2O75791 330 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GTF2H1P32780 548 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 TUBB4BP68371 445 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 NOP14P78316 857 aaKnown RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CDR2Q01850 454 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 NIPA1Q7RTP0 329 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 C1orf131Q8NDD1 294 aaKnown RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 DDX1Q92499 740 aaKnown RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 OPTNQ96CV9 577 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 SELENOSQ9BQE4 189 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 ASIC3Q9UHC3 531 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GGT7Q9UJ14 662 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 ZNF112Q9UJU3 913 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 GOLGA8MH3BSY2 632 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CAND2O75155 1236 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CXCL8P10145 99 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 NSFP46459 744 aaKnown RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 IFI35P80217 286 aaPredicted RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 ZNF844Q08AG5 666 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 NCOA4Q13772 614 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 SLC29A2Q14542 456 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 SEL1L2Q5TEA6 688 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 EMC1Q8N766 993 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 MCPH1Q8NEM0 835 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CCDC26Q8TAB7 109 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 EPS8L3Q8TE67 593 aaKnown RBP12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CEP89Q96ST8 783 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 FMO2Q99518 471 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 LPIN3Q9BQK8 851 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 ARHGAP28Q9P2N2 729 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 CTNNAL1Q9UBT7 734 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 PNMA2Q9UL42 364 aa12.75□□□□□ -0.37
PTPRN-204ENST00000423636 COL2A1P02458 1487 aaPredicted RBP12.74□□□□□ -0.37
PTPRN-204ENST00000423636 E7EVH7 732 aa12.74□□□□□ -0.37
PTPRN-204ENST00000423636 TXNP10599 105 aaKnown RBP12.74□□□□□ -0.37
PTPRN-204ENST00000423636 YBX3P16989 372 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRN-204ENST00000423636 NR1D1P20393 614 aa12.74□□□□□ -0.37
PTPRN-204ENST00000423636 GRM1Q13255 1194 aa12.74□□□□□ -0.37
PTPRN-204ENST00000423636 LRRC14Q15048 493 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms