RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TNFAIP3P21580 790 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 LMAN1P49257 510 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 GALCP54803 685 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 HADHBP55084 474 aaKnown RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 CCL23P55773 120 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 EPC2Q52LR7 807 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 ARHGEF16Q5VV41 709 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 SEPT14Q6ZU15 432 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 ZNF365Q70YC5 407 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 HAUS6Q7Z4H7 955 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 NLRX1Q86UT6 975 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 RASGEF1CQ8N431 466 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 LMO3Q8TAP4 145 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 WHAMMQ8TF30 809 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 CTNNBL1Q8WYA6 563 aaPredicted RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 ZFP91Q96JP5 570 aaPredicted RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 RMDN3Q96TC7 470 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 CDX2Q99626 313 aaPredicted RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 GPR88Q9GZN0 384 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 TRMT13Q9NUP7 481 aaKnown RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 SMARCAL1Q9NZC9 954 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 EHD2Q9NZN4 543 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 PKD2L1Q9P0L9 805 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 TTC7AQ9ULT0 858 aaPredicted RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 STAM2O75886 525 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 SMTNP53814 917 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 TTLL4Q14679 1199 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 PPP2R5EQ16537 467 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 GSPT2Q8IYD1 628 aaKnown RBP15.94■□□□□ 0.14
USP4-203ENST00000415188 NSUN6Q8TEA1 469 aaKnown RBP15.94■□□□□ 0.14
USP4-203ENST00000415188 SPIRE2Q8WWL2 714 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 SH3GL2Q99962 352 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 MTG1Q9BT17 334 aaPredicted RBP15.94■□□□□ 0.14
USP4-203ENST00000415188 IKZF4Q9H2S9 585 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 HSPBP1Q9NZL4 362 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 CWC15Q9P013 229 aaKnown RBP15.94■□□□□ 0.14
USP4-203ENST00000415188 AMFRQ9UKV5 643 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 EMSYQ7Z589 1322 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 CDH23Q9H251 3354 aa15.94■□□□□ 0.14
USP4-203ENST00000415188 ANKRD62A6NC57 917 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 ERICH4A6NGS2 130 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 GRXCR1A8MXD5 290 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 HSF2BPO75031 334 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 CYP2C9P11712 490 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 ACTN2P35609 894 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 GGCXP38435 758 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 SLC7A5Q01650 507 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 CUL1Q13616 776 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 LY6KQ17RY6 165 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 CCDC62Q6P9F0 684 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 LEKR1Q6ZMV7 388 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 OTUD6AQ7L8S5 288 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 NT5DC3Q86UY8 548 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 RHOT2Q8IXI1 618 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 KIFAP3Q92845 792 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 HES6Q96HZ4 224 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 CDHR1Q96JP9 859 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 PKNOX2Q96KN3 472 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 SEZ6LQ9BYH1 1024 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 WNT8AQ9H1J5 351 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 SLITRK6Q9H5Y7 841 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 FAM204AQ9H8W3 233 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 IL23AQ9NPF7 189 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 KCNG1Q9UIX4 513 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 NFASCO94856 1347 aa15.93■□□□□ 0.14
USP4-203ENST00000415188 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 A6NJR5 290 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 H0YCG3 227 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 AGPSO00116 658 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 BACH1O14867 736 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 CEP104O60308 925 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 MYCLP12524 364 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 SCP2P22307 547 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 GTF2H1P32780 548 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 PPFIA1Q13136 1202 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 STXBP2Q15833 593 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 NBPF20Q3BBV1 942 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 BRDTQ58F21 947 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 XKR9Q5GH70 373 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 RASIP1Q5U651 963 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 PSRC1Q6PGN9 363 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 USP37Q86T82 979 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 VSIG10LQ86VR7 867 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 MAP4K3Q8IVH8 894 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 GLYCTKQ8IVS8 523 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 AFG1LQ8WV93 481 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 MYLIPQ8WY64 445 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 ATP6V0A1Q93050 837 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 RUFY1Q96T51 708 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 KRT12Q99456 494 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 NAP1L3Q99457 506 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 AGPAT1Q99943 283 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 PACSIN2Q9UNF0 486 aaPredicted RBP15.92■□□□□ 0.14
USP4-203ENST00000415188 KIAA1217Q5T5P2 1943 aa15.92■□□□□ 0.14
USP4-203ENST00000415188 A6NNZ2 444 aa15.91■□□□□ 0.14
USP4-203ENST00000415188 BHMG1C9JSJ3 638 aaPredicted RBP15.91■□□□□ 0.14
USP4-203ENST00000415188 IVLP07476 585 aa15.91■□□□□ 0.14
USP4-203ENST00000415188 DNAJB2P25686 324 aa15.91■□□□□ 0.14
USP4-203ENST00000415188 PBX2P40425 430 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms