RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 REEP2Q9BRK0 252 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 DNAJC12Q9UKB3 198 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 ALG6Q9Y672 507 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 AGTP01019 485 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 CALCAP01258 141 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 PON1P27169 355 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 SMARCA1P28370 1054 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 RAB27AP51159 221 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 TGFB2P61812 414 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 DEUP1Q05D60 604 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 HHATQ5VTY9 493 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 CRELD2Q6UXH1 353 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 PDCD7Q8N8D1 485 aaKnown RBP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 FAM84AQ96KN4 292 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 MRIQ9BWK5 157 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 ADAM7Q9H2U9 754 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 PFASO15067 1338 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 IFNB1P01574 187 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 ALDH3A1P30838 453 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 UBL4BQ8N7F7 174 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 PPFIBP2Q8ND30 876 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 HAUS1Q96CS2 278 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 ZNF668Q96K58 619 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 MTUS1Q9ULD2 1270 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 CDK5RAP2Q96SN8 1893 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 TISP43B9A030 160 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 RIPK2O43353 540 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 CYP11B2P19099 503 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 BAATQ14032 418 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 SGO2Q562F6 1265 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 PIGWQ7Z7B1 504 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 ECHDC2Q86YB7 292 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 SCFD1Q8WVM8 642 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 IQCDQ96DY2 449 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 NAP1L3Q99457 506 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-202ENST00000409251 RABGAP1Q9Y3P9 1069 aa13.79□□□□□ -0.2
PTPRN-202ENST00000409251 AKAP3O75969 853 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 CHKAP35790 457 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 RASSF2P50749 326 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 HIRAP54198 1017 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TNFAIP1Q13829 316 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 CDCA2Q69YH5 1023 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SNRNP48Q6IEG0 339 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 EPM2AIP1Q7L775 607 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 ATP8B4Q8TF62 1192 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SLC20A1Q8WUM9 679 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SNRNP27Q8WVK2 155 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 KLHL11Q9NVR0 708 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 WRAP73Q9P2S5 460 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SLC4A7Q9Y6M7 1214 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 IPO5O00410 1097 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 CAPN9O14815 690 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 NVLO15381 856 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 LCA5LO95447 670 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 FTLP02792 175 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 GSTA1P08263 222 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 COG2Q14746 738 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 EPC2Q52LR7 807 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 IRF2BP2Q7Z5L9 587 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SLC25A41Q8N5S1 370 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 CFAP61Q8NHU2 1237 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 SLC30A5Q8TAD4 765 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 ERMNQ8TAM6 284 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TLCD1Q96CP7 247 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 RMDN3Q96TC7 470 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 MRPL11Q9Y3B7 192 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 MYH4Q9Y623 1939 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 hCG_1984214I3L0E3 225 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 KIAA0391O15091 583 aaKnown RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 ATP9AO75110 1047 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 FAM13AO94988 1023 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 MPP2Q14168 576 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 ARSHQ5FYA8 562 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 DCAF12L1Q5VU92 463 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 RFWD3Q6PCD5 774 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TRIM59Q8IWR1 403 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 CYP4X1Q8N118 509 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 ZNF713Q8N859 430 aaPredicted RBP13.78□□□□□ -0.2
PTPRN-202ENST00000409251 MAGEC3Q8TD91 643 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 LENG9Q96B70 501 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TEPSINQ96N21 525 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TBC1D10AQ9BXI6 508 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 GPRC5CQ9NQ84 441 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 TXLNGQ9NUQ3 528 aa13.78□□□□□ -0.2
PTPRN-202ENST00000409251 C10orf71Q711Q0 1435 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 C2orf71A6NGG8 1288 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 PFDN1O60925 122 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 ECEL1O95672 775 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 NPEPPSP55786 919 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 FKBP1AP62942 108 aaKnown RBP13.77□□□□□ -0.2
PTPRN-202ENST00000409251 KRT17Q04695 432 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 CEP55Q53EZ4 464 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 PLA2G4FQ68DD2 849 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 GADL1Q6ZQY3 521 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 HS2ST1Q7LGA3 356 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 FAM13CQ8NE31 585 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 OTUD5Q96G74 571 aa13.77□□□□□ -0.2
PTPRN-202ENST00000409251 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.77□□□□□ -0.2
PTPRN-202ENST00000409251 RPTORQ8N122 1335 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms