RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KCTD1Q719H9 257 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 MTDHQ86UE4 582 aaKnown RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 NLGN4XQ8N0W4 816 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 EFHBQ8N7U6 833 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 STPG3Q8N7X2 389 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF496Q96IT1 587 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 RMDN3Q96TC7 470 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 BARD1Q99728 777 aaKnown RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 CELF4Q9BZC1 486 aaKnown RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 PDGFDQ9GZP0 370 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 NUP62CLQ9H1M0 184 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 HELLSQ9NRZ9 838 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 TESMINQ9Y4I5 508 aa4.76□□□□□ -1.65
HMGB1-204ENST00000399489 MAGED1Q9Y5V3 778 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-204ENST00000399489 ANKRD18BA2A2Z9 1011 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PTPDC1A2A3K4 754 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF839A8K0R7 811 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PATE3B3GLJ2 98 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 B4E171 279 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 KPNA5O15131 536 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 UBXN7O94888 489 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 DDX58O95786 925 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CACNB3P54284 484 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 SLC45A4Q5BKX6 768 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PHF19Q5T6S3 580 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CD276Q5ZPR3 534 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 SWSAP1Q6NVH7 229 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CRIP3Q6Q6R5 217 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CASC1Q6TDU7 716 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 TMTC1Q8IUR5 882 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZC3H7AQ8IWR0 971 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 FTSJ3Q8IY81 847 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 COLGALT2Q8IYK4 626 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 WDR48Q8TAF3 677 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ATRIPQ8WXE1 791 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ARL8AQ96BM9 186 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 HVCN1Q96D96 273 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 MVB12AQ96EY5 273 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 LSM14BQ9BX40 385 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 TMEM120AQ9BXJ8 343 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CARD11Q9BXL7 1154 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ITM2CQ9NQX7 267 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 OXSMQ9NWU1 459 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 IFT80Q9P2H3 777 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 SERPINB13Q9UIV8 391 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 WASF3Q9UPY6 502 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 SYNDIG1LA6NDD5 238 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 TIPRLO75663 272 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CSTBP04080 98 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZBTB48P10074 688 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 C5AR1P21730 350 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 XPAP23025 273 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 HOXC13P31276 330 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ATICP31939 592 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ELF1P32519 619 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CSF2RBP32927 897 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 KRT20P35900 424 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 KRT83P78385 493 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 WASHC5Q12768 1159 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PRKD1Q15139 912 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CDSNQ15517 529 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 SLC10A5Q5PT55 438 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 RNF220Q5VTB9 566 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ITPRIPL1Q6GPH6 555 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 NPNTQ6UXI9 565 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 RBM12BQ8IXT5 1001 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CACNA2D3Q8IZS8 1091 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ESX1Q8N693 406 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PCYOX1LQ8NBM8 494 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ADAMTS18Q8TE60 1221 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 C1GALT1C1Q96EU7 318 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZMAT2Q96NC0 199 aaKnown RBP4.75□□□□□ -1.65
HMGB1-204ENST00000399489 LRRC37BQ96QE4 947 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ORAI2Q96SN7 254 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 CHCHD6Q9BRQ6 235 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF747Q9BV97 191 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 MRIQ9BWK5 157 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF341Q9BYN7 854 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 PLEKHA5Q9HAU0 1116 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 UBN1Q9NPG3 1134 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 KCND1Q9NSA2 647 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 GGA3Q9NZ52 723 aa4.75□□□□□ -1.65
HMGB1-204ENST00000399489 NKRFO15226 690 aaKnown RBP eCLIP4.74□□□□□ -1.65
HMGB1-204ENST00000399489 TBX18O95935 607 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 AMHP03971 560 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 PDIA3P30101 505 aaKnown RBP4.74□□□□□ -1.65
HMGB1-204ENST00000399489 KRT9P35527 623 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 EPHA5P54756 1037 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 RAC3P60763 192 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 CCNG2Q16589 344 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 ZMAT1Q5H9K5 638 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 FAM209BQ5JX69 171 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 BTBD8Q5XKL5 378 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 LMBRD2Q68DH5 695 aaPredicted RBP4.74□□□□□ -1.65
HMGB1-204ENST00000399489 RFX8Q6ZV50 586 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 USP45Q70EL2 814 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 Q8TCH9 128 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 TRAPPC12Q8WVT3 735 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 LRTOMTQ8WZ04 291 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 PTPN18Q99952 460 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms