RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 PGM2Q96G03 612 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 HEXIM2Q96MH2 286 aaKnown RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 THTPAQ9BU02 230 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 VPS11Q9H270 941 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 KPNA7A9QM74 516 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 CCND2P30279 289 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 CRKP46108 304 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 ITGB3BPQ13352 177 aaPredicted RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 RARS2Q5T160 578 aaKnown RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 NLGN1Q8N2Q7 840 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 ZBTB10Q96DT7 871 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 NSL1Q96IY1 281 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 ANKRD27Q96NW4 1050 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 TRIM33Q9UPN9 1127 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 SIK3Q9Y2K2 1263 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 REXO2Q9Y3B8 237 aaKnown RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 SLC4A7Q9Y6M7 1214 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 HSPA8P11142 646 aaKnown RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 CASP4P49662 377 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 PSMC1P62191 440 aaKnown RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 LRRC36Q1X8D7 754 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 NIM1KQ8IY84 436 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 GPD1LQ8N335 351 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 DCLK2Q8N568 766 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 C7orf31Q8N865 590 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 TATDN2Q93075 761 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 KLHL11Q9NVR0 708 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 FIS1Q9Y3D6 152 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 PCDHB2Q9Y5E7 798 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 DIP2AQ14689 1571 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 APOEP02649 317 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 EEF1B2P24534 225 aaKnown RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 BCAR1P56945 870 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 PSMC5P62195 406 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 TAP1Q03518 808 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 C3orf62Q6ZUJ4 267 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 MIGA2Q7L4E1 593 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 RMDN3Q96TC7 470 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 FAM118BQ9BPY3 351 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 WHRNQ9P202 907 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 GJA3Q9Y6H8 435 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 LMTK3Q96Q04 1460 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 AKAP3O75969 853 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ROR1Q01973 937 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ZBTB17Q13105 803 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 RCN1Q15293 331 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ACAD11Q709F0 780 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 NLRP9Q7RTR0 991 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ACAP3Q96P50 834 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 KLF6Q99612 283 aaPredicted RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 AGPAT3Q9NRZ7 376 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 RNF225M0QZC1 329 aaPredicted RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 SKAP2O75563 359 aaPredicted RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 CAMTA2O94983 1202 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 NTSR2O95665 410 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 RALAP11233 206 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 SFNP31947 248 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ALDH18A1P54886 795 aaKnown RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 SNRNP35Q16560 246 aaKnown RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 TMCO4Q5TGY1 634 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 DAB2IPQ5VWQ8 1189 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 DNAAF5Q86Y56 855 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 IQCKQ8N0W5 287 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 LRRC43Q8N309 656 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 ATP8B4Q8TF62 1192 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 CCDC138Q96M89 665 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 MAGED2Q9UNF1 606 aaPredicted RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 PDCD2Q16342 344 aaPredicted RBP11.68□□□□□ -0.54
HPS4-202ENST00000398145 NRBF2Q96F24 287 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 SENP7Q9BQF6 1050 aa11.68□□□□□ -0.54
HPS4-202ENST00000398145 GTPBP10A4D1E9 387 aaKnown RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 SRGAP2BP0DMP2 458 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 PAX7P23759 505 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 EIF3EP60228 445 aaKnown RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 TAF1BQ53T94 588 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 DCAF15Q66K64 600 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 RSBN1LQ6PCB5 846 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 THNSL1Q8IYQ7 743 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 HAUS8Q9BT25 410 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 MED10Q9BTT4 135 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 MANSC1Q9H8J5 431 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 PDP2Q9P2J9 529 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 MARCOQ9UEW3 520 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 hCG_2014768A0A024R1R8 64 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 H3BRJ5 948 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 KRT4P19013 534 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 IFI35P80217 286 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 KPNB1Q14974 876 aaKnown RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 ZNF699Q32M78 642 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 MDH1BQ5I0G3 518 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 ADGRA1Q86SQ6 560 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 CNKSR1Q969H4 720 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 XAB2Q9HCS7 855 aaKnown RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 RBAKQ9NYW8 714 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.67□□□□□ -0.54
HPS4-202ENST00000398145 ASNSP08243 561 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 SRGAP2CP0DJJ0 459 aa11.67□□□□□ -0.54
HPS4-202ENST00000398145 HNRNPH3P31942 346 aaKnown RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 ELF3P78545 371 aaPredicted RBP11.67□□□□□ -0.54
HPS4-202ENST00000398145 ZNF200P98182 395 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms