RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 C1orf146Q5VVC0 180 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 LMBRD2Q68DH5 695 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 ANKRD13AQ8IZ07 590 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 PHACTR4Q8IZ21 702 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 FAM161BQ96MY7 647 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 PRPF18Q99633 342 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 LSG1Q9H089 658 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 EML4Q9HC35 981 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 PVALEFA0A1B0GWK0 134 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 EIF3DO15371 548 aaKnown RBP eCLIP7.57□□□□□ -1.2
UPF2-203ENST00000397053 FTLP02792 175 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 NR1D1P20393 614 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 PMS1P54277 932 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 TAP1Q03518 808 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 DRAP1Q14919 205 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 HLFQ16534 295 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 LRRC8EQ6NSJ5 796 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 RIN2Q8WYP3 895 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 INPP5DQ92835 1189 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 ACTR5Q9H9F9 607 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 ARHGEF38Q9NXL2 777 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 NRBP1Q9UHY1 535 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 FHOD1Q9Y613 1164 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 H0Y626 953 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 KIAA0391O15091 583 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 ACADMP11310 421 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 RAG1P15918 1043 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 POLE2P56282 527 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 HDAC4P56524 1084 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 STARD3Q14849 445 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 LRRC8BQ6P9F7 803 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 C16orf62Q7Z3J2 963 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SLC7A14Q8TBB6 771 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 TSPAN17Q96FV3 270 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 ELAC2Q9BQ52 826 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 COPS7BQ9H9Q2 264 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 NDE1Q9NXR1 346 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 RASSF10A6NK89 507 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PRR23D1E9PI22 279 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 POLRMTO00411 1230 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 PSMD3O43242 534 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 APOA1P02647 267 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 URODP06132 367 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 NR3C2P08235 984 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PRR23D2P0DMB1 279 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 SOAT1P35610 550 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SLC7A5Q01650 507 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TMED1Q13445 227 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TRADDQ15628 312 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ZNF438Q7Z4V0 828 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ZBED8Q8IZ13 594 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 DIS3LQ8TF46 1054 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 APOL5Q9BWW9 433 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TMEM245Q9H330 911 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 BCL2L12Q9HB09 334 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CYP4F11Q9HBI6 524 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 DCP1AQ9NPI6 582 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 ABI2Q9NYB9 513 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 CEP72Q9P209 647 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 DCTN4Q9UJW0 460 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 FRMD3A2A2Y4 597 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 F8W810 466 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PJA2O43164 708 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 HAUS5O94927 633 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TRIM49P0CI25 452 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TRIM49CP0CI26 452 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 MYBL1P10243 752 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 VCLP18206 1134 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CHRM3P20309 590 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CPT1AP50416 773 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 BFSP2Q13515 415 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 NFIXQ14938 502 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 POLD3Q15054 466 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 PCSK7Q16549 785 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TKFCQ3LXA3 575 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CENPPQ6IPU0 288 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 EPM2AIP1Q7L775 607 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 PTPRN2Q92932 1015 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TMEM143Q96AN5 459 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PARVAQ9NVD7 372 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CD274Q9NZQ7 290 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 STAP2Q9UGK3 403 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 RCOR1Q9UKL0 485 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 RAB23Q9ULC3 237 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ATP11BQ9Y2G3 1177 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ARAP3Q8WWN8 1544 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 STX7O15400 261 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 H2AFYO75367 372 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 TRIM16O95361 564 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CDC27P30260 824 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 AVPR1AP37288 418 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 THPOP40225 353 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SLC16A1P53985 500 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 COASYQ13057 564 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 KRT31Q15323 416 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 DGKDQ16760 1214 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PFKFB3Q16875 520 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 PRAMEF18Q5VWM3 479 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 KIRREL3Q8IZU9 778 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TMEM60Q9H2L4 133 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms